PlantSME Plant secondary metabolism enzyme database

Polytrichum commune (polytrichum_commune)

Imported from atlas release summary for Polytrichum commune.

890
Candidate Protein Records
606
Pathway-Level Records
1772
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 25.25% Terpenoid pathway 24.92% Alkaloid pathway 21.12% Flavonoid pathway 12.38% Rosmarinic acid pathway 10.89% Steroid pathway 5.45%
Family Distribution
C4H 7.62% C3'H/CYP98A 6.43% CYP76 5.42% 4CL 5.25% BAHD 4.97% POD 4.01% NMT 3.33% IFS 3.1%
Other Families 59.88%
More Families (93)
F3H 49 2.77% DWF4/CYP90B1 49 2.77% T3O 46 2.6% STR 41 2.31% BR6OX2/CYP85A2 39 2.2% F3'H/CYP75B 37 2.09% GS 35 1.98% UGT 32 1.81% IFR 31 1.75% 7DLGT 30 1.69% UFGT 30 1.69% PYKS 29 1.64% CODM/T6ODM 28 1.58% H6H 23 1.3% SGD 21 1.19% IO 21 1.19% PAL 21 1.19% LAC 21 1.19% T16H 19 1.07% F3'5'H/CYP75A 19 1.07% COMT 19 1.07% SMT1/SMT2/SMT3 19 1.07% CHS 18 1.02% CAD 18 1.02% CYP71 18 1.02% G8O/G8H 17 0.96% FNS 17 0.96% TRI/TRII 16 0.9% BR6OX1/CYP85A1 16 0.9% 7DLH 13 0.73% RAS 11 0.62% SLS 10 0.56% CSE 10 0.56% CYP90D1 10 0.56% CNMT 9 0.51% 16OMT 9 0.51% ANR 9 0.51% HCT 9 0.51% CPD/CYP90A1 9 0.51% CYP80B1 8 0.45% NCS 8 0.45% CPR 8 0.45% CAS 8 0.45% CYP719 7 0.4% BBE 7 0.4% F5H/CYP84A 7 0.4% PMT 6 0.34% MPO 6 0.34% TAT 6 0.34% AACT 6 0.34% COR 5 0.28% DFR 5 0.28% GGPPS 5 0.28% 8HGO 4 0.23% CHI 4 0.23% ANS/LDOX 4 0.23% CCR 4 0.23% SQS/FDFT1 4 0.23% DWF1 4 0.23% DXS 4 0.23% ADC 3 0.17% SMO1/SMO2 3 0.17% CYP51G1 3 0.17% DWF5 3 0.17% ROT3/CYP90C1 3 0.17% CMK/IspE 3 0.17% FPPS 3 0.17% TDC 2 0.11% ODC 2 0.11% ISY 2 0.11% LAMT 2 0.11% TYDC_DDC 2 0.11% CYP80F1 2 0.11% FLS 2 0.11% CCoAOMT 2 0.11% DET2 2 0.11% SQE 2 0.11% HMGS 2 0.11% HDR/IspH 2 0.11% HMGR 2 0.11% MVK 2 0.11% MCT/IspD 2 0.11% MVD 2 0.11% HPPR 1 0.06% DWF7 1 0.06% FK 1 0.06% HYD1 1 0.06% CPI1 1 0.06% PMK 1 0.06% MDS/IspF 1 0.06% DXR 1 0.06% HDS/IspG 1 0.06% IDI 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 153 11 POD (64) View species results
Terpenoid pathway 151 18 BAHD (58) View species results
Alkaloid pathway 128 16 NMT (20) View species results
Flavonoid pathway 75 8 UFGT (29) View species results
Rosmarinic acid pathway 66 7 C4H (33) View species results
Steroid pathway 33 12 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 753 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 108 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
POcom2480065750 Terpenoid UGT medium pass
POcom2570075110 Terpenoid UGT low borderline
POcom2570075120 Terpenoid UGT low borderline
POcom2580076450 Terpenoid UGT medium pass
POcom2580076470 Terpenoid UGT medium pass
POcom770128220 Terpenoid UGT medium pass
POcom796210133540 Terpenoid UGT medium pass
POcom813700161250 Terpenoid UGT medium pass
POcom813800162410 Terpenoid UGT medium pass
POcom814050165720 Terpenoid UGT medium pass
POcom814520172400 Terpenoid UGT medium pass
POcom815070177960 Terpenoid UGT medium pass
POcom815230181490 Terpenoid UGT medium pass
POcom815740188600 Terpenoid UGT medium pass
POcom816170194720 Terpenoid UGT medium pass
POcom816350196410 Terpenoid UGT low borderline
POcom816770200140 Terpenoid UGT medium pass
POcom816910204600 Terpenoid UGT medium pass
POcom817780224730 Terpenoid UGT medium pass
POcom817780224750 Terpenoid UGT medium pass
POcom817780224770 Terpenoid UGT medium pass
POcom817780224790 Terpenoid UGT medium pass