PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN025794 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN025795 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN025796 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN025799 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN026093 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN028926 Alkaloid 7DLGT medium pass
raphanus_raphanistrum_GWHPANWN029007 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN029058 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN030054 Alkaloid 7DLGT medium pass
raphanus_raphanistrum_GWHPANWN030328 Alkaloid 7DLGT medium pass
raphanus_raphanistrum_GWHPANWN031855 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN031879 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN031896 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN032298 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN032704 Alkaloid 7DLGT high pass
raphanus_raphanistrum_GWHPANWN033348 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN035161 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN035262 Alkaloid 7DLGT medium pass
raphanus_raphanistrum_GWHPANWN035263 Alkaloid 7DLGT medium pass
raphanus_raphanistrum_GWHPANWN035264 Alkaloid 7DLGT medium pass
raphanus_raphanistrum_GWHPANWN036406 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN036491 Alkaloid 7DLGT medium pass
raphanus_raphanistrum_GWHPANWN038661 Alkaloid 7DLGT high pass
raphanus_raphanistrum_GWHPANWN039596 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN040105 Alkaloid 7DLGT high pass
raphanus_raphanistrum_GWHPANWN040326 Alkaloid 7DLGT high pass
raphanus_raphanistrum_GWHPANWN040327 Alkaloid 7DLGT high pass
raphanus_raphanistrum_GWHPANWN040328 Alkaloid 7DLGT high pass
raphanus_raphanistrum_GWHPANWN040329 Alkaloid 7DLGT medium pass
raphanus_raphanistrum_GWHPANWN040913 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN042461 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN042574 Alkaloid 7DLGT medium pass
raphanus_raphanistrum_GWHPANWN042575 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN042969 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN042972 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN043713 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN043940 Alkaloid 7DLGT high pass
raphanus_raphanistrum_GWHPANWN045643 Alkaloid 7DLGT medium pass
raphanus_raphanistrum_GWHPANWN047071 Alkaloid 7DLGT low borderline
raphanus_raphanistrum_GWHPANWN047647 Alkaloid 7DLGT medium pass