Raphanus raphanistrum (raphanus_raphanistrum)
Imported from atlas release summary for Raphanus raphanistrum.
1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1755
Candidate Genes
BAHD
6.59%
C4H
5.82%
C3'H/CYP98A
5.75%
POD
4.71%
CYP76
3.94%
4CL
3.6%
IFS
3.58%
T3O
3.42%
Other Families
62.62%
More Families (96)
F3H
147
3.33%
DWF4/CYP90B1
120
2.72%
NMT
117
2.65%
F3'H/CYP75B
96
2.17%
UGT
95
2.15%
CODM/T6ODM
91
2.06%
7DLGT
90
2.04%
UFGT
89
2.01%
SMT1/SMT2/SMT3
86
1.95%
SGD
84
1.9%
BR6OX2/CYP85A2
76
1.72%
CYP71
76
1.72%
STR
75
1.7%
TRI/TRII
72
1.63%
CSE
70
1.58%
H6H
66
1.49%
TPS
64
1.45%
CAS
60
1.36%
CAD
57
1.29%
GES
50
1.13%
COMT
50
1.13%
IFR
46
1.04%
LAC
44
1.0%
ANR
39
0.88%
T16H
37
0.84%
16OMT
36
0.81%
F5H/CYP84A
36
0.81%
RAS
35
0.79%
CYP90D1
32
0.72%
IO
30
0.68%
SLS
29
0.66%
TAT
29
0.66%
G8O/G8H
26
0.59%
CCR
26
0.59%
GS
25
0.57%
LAMT
25
0.57%
PYKS
23
0.52%
F3'5'H/CYP75A
22
0.5%
8HGO
21
0.48%
PAL
21
0.48%
HCT
19
0.43%
CPR
19
0.43%
CPD/CYP90A1
19
0.43%
FPPS
19
0.43%
7DLH
18
0.41%
CYP51G1
17
0.38%
AACT
17
0.38%
ANS/LDOX
16
0.36%
BR6OX1/CYP85A1
16
0.36%
FNS
15
0.34%
BBE
14
0.32%
NCS
14
0.32%
CCoAOMT
14
0.32%
COR
13
0.29%
PMT
13
0.29%
ROT3/CYP90C1
12
0.27%
SQE
11
0.25%
CHS
10
0.23%
SQS/FDFT1
10
0.23%
SMO1/SMO2
9
0.2%
GGPPS
9
0.2%
HMGR
9
0.2%
MPO
8
0.18%
CYP80B1
8
0.18%
MVD
8
0.18%
CNMT
7
0.16%
DFR
7
0.16%
HPPR
7
0.16%
TYDC_DDC
6
0.14%
ISY
6
0.14%
DET2
6
0.14%
DWF7
6
0.14%
MCT/IspD
6
0.14%
IDI
6
0.14%
FLS
5
0.11%
CHI
5
0.11%
MVK
5
0.11%
PMK
5
0.11%
TDC
4
0.09%
CYP719
4
0.09%
DXS
4
0.09%
CMK/IspE
3
0.07%
HDR/IspH
3
0.07%
HMGS
3
0.07%
6OMT_4OMT_SOMT
2
0.05%
CPI1
2
0.05%
HYD1
2
0.05%
DWF1
2
0.05%
DWF5
2
0.05%
DXR
2
0.05%
MDS/IspF
2
0.05%
ADC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
FK
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 511 | 20 | BAHD (229) | View species results |
| Phenylpropanoid pathway | 425 | 11 | POD (190) | View species results |
| Alkaloid pathway | 395 | 20 | SGD (76) | View species results |
| Flavonoid pathway | 150 | 10 | UFGT (85) | View species results |
| Steroid pathway | 139 | 11 | SMT1/SMT2/SMT3 (57) | View species results |
| Rosmarinic acid pathway | 135 | 7 | C4H (53) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1668 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 345 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| raphanus_raphanistrum_GWHPANWN000776 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| raphanus_raphanistrum_GWHPANWN002187 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| raphanus_raphanistrum_GWHPANWN002290 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| raphanus_raphanistrum_GWHPANWN002291 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| raphanus_raphanistrum_GWHPANWN003966 | Phenylpropanoid | HCT | medium | pass | HCT__00002__sp_Q9FI78_HST_ARATH |
| raphanus_raphanistrum_GWHPANWN008018 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| raphanus_raphanistrum_GWHPANWN009176 | Phenylpropanoid | HCT | medium | pass | HCT__00002__sp_Q9FI78_HST_ARATH |
| raphanus_raphanistrum_GWHPANWN009177 | Phenylpropanoid | HCT | medium | pass | HCT__00002__sp_Q9FI78_HST_ARATH |
| raphanus_raphanistrum_GWHPANWN012991 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| raphanus_raphanistrum_GWHPANWN012993 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| raphanus_raphanistrum_GWHPANWN021584 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| raphanus_raphanistrum_GWHPANWN025032 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| raphanus_raphanistrum_GWHPANWN025033 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| raphanus_raphanistrum_GWHPANWN028701 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| raphanus_raphanistrum_GWHPANWN028916 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| raphanus_raphanistrum_GWHPANWN038493 | Phenylpropanoid | HCT | medium | pass | HCT__00002__sp_Q9FI78_HST_ARATH |
| raphanus_raphanistrum_GWHPANWN040467 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| raphanus_raphanistrum_GWHPANWN045672 | Phenylpropanoid | HCT | medium | pass | HCT__00002__sp_Q9FI78_HST_ARATH |
| raphanus_raphanistrum_GWHPANWN048004 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |