PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN001794 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN001803 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN001949 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN003682 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN005472 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN007044 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN007045 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN007239 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN007240 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN008585 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN011222 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN012689 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN014744 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN014745 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN014746 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN014967 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN015168 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN018286 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN019574 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN019775 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN019776 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN020141 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN021865 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN021867 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN021976 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN022872 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN023051 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN023941 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN024454 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN024669 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN028705 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN029368 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN030476 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN030960 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN032069 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN032313 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN034666 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN035178 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN035179 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN036209 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN036210 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN039211 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN039819 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN041218 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN041219 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN041696 Phenylpropanoid CAD medium borderline
raphanus_raphanistrum_GWHPANWN042114 Phenylpropanoid CAD medium pass
raphanus_raphanistrum_GWHPANWN042661 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN042775 Phenylpropanoid CAD low borderline
raphanus_raphanistrum_GWHPANWN044339 Phenylpropanoid CAD low borderline