PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN000369 Phenylpropanoid LAC low borderline
raphanus_raphanistrum_GWHPANWN000748 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN000896 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN001373 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN001374 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN001441 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN001639 Phenylpropanoid LAC low borderline
raphanus_raphanistrum_GWHPANWN004701 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN005249 Phenylpropanoid LAC low borderline
raphanus_raphanistrum_GWHPANWN008472 Phenylpropanoid LAC low borderline
raphanus_raphanistrum_GWHPANWN009258 Phenylpropanoid LAC low borderline
raphanus_raphanistrum_GWHPANWN009259 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN009350 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN009402 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN009411 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN009412 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN009895 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN010019 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN010020 Phenylpropanoid LAC low borderline
raphanus_raphanistrum_GWHPANWN010021 Phenylpropanoid LAC low borderline
raphanus_raphanistrum_GWHPANWN011653 Phenylpropanoid LAC low borderline
raphanus_raphanistrum_GWHPANWN011957 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN011958 Phenylpropanoid LAC low borderline
raphanus_raphanistrum_GWHPANWN012864 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN019592 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN022160 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN022561 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN025695 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN026169 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN026301 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN026691 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN032707 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN032857 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN040169 Phenylpropanoid LAC low borderline
raphanus_raphanistrum_GWHPANWN040170 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN040171 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN040300 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN040464 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN040562 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN041336 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN043403 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN044137 Phenylpropanoid LAC low borderline
raphanus_raphanistrum_GWHPANWN047595 Phenylpropanoid LAC medium pass
raphanus_raphanistrum_GWHPANWN047685 Phenylpropanoid LAC medium pass