PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN001803 Alkaloid GS high pass
raphanus_raphanistrum_GWHPANWN002246 Alkaloid GS low borderline
raphanus_raphanistrum_GWHPANWN006413 Alkaloid GS low borderline
raphanus_raphanistrum_GWHPANWN007044 Alkaloid GS high pass
raphanus_raphanistrum_GWHPANWN007045 Alkaloid GS high pass
raphanus_raphanistrum_GWHPANWN007239 Alkaloid GS high pass
raphanus_raphanistrum_GWHPANWN007240 Alkaloid GS high pass
raphanus_raphanistrum_GWHPANWN008235 Alkaloid GS low borderline
raphanus_raphanistrum_GWHPANWN019574 Alkaloid GS high pass
raphanus_raphanistrum_GWHPANWN019775 Alkaloid GS high pass
raphanus_raphanistrum_GWHPANWN019776 Alkaloid GS high pass
raphanus_raphanistrum_GWHPANWN021865 Alkaloid GS high pass
raphanus_raphanistrum_GWHPANWN021867 Alkaloid GS high pass
raphanus_raphanistrum_GWHPANWN028163 Alkaloid GS low borderline
raphanus_raphanistrum_GWHPANWN028705 Alkaloid GS medium pass
raphanus_raphanistrum_GWHPANWN032069 Alkaloid GS high pass
raphanus_raphanistrum_GWHPANWN032422 Alkaloid GS low borderline
raphanus_raphanistrum_GWHPANWN034606 Alkaloid GS low borderline
raphanus_raphanistrum_GWHPANWN035178 Alkaloid GS low borderline
raphanus_raphanistrum_GWHPANWN035179 Alkaloid GS low borderline
raphanus_raphanistrum_GWHPANWN038683 Alkaloid GS low borderline
raphanus_raphanistrum_GWHPANWN042114 Alkaloid GS low borderline
raphanus_raphanistrum_GWHPANWN045288 Alkaloid GS low borderline
raphanus_raphanistrum_GWHPANWN047003 Alkaloid GS medium pass
raphanus_raphanistrum_GWHPANWN047799 Alkaloid GS high pass