PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.12% Phenylpropanoid pathway 24.22% Alkaloid pathway 22.51% Flavonoid pathway 8.55% Steroid pathway 7.92% Rosmarinic acid pathway 7.69%
Family Distribution
BAHD 6.59% C4H 5.82% C3'H/CYP98A 5.75% POD 4.71% CYP76 3.94% 4CL 3.6% IFS 3.58% T3O 3.42%
Other Families 62.62%
More Families (96)
F3H 147 3.33% DWF4/CYP90B1 120 2.72% NMT 117 2.65% F3'H/CYP75B 96 2.17% UGT 95 2.15% CODM/T6ODM 91 2.06% 7DLGT 90 2.04% UFGT 89 2.01% SMT1/SMT2/SMT3 86 1.95% SGD 84 1.9% BR6OX2/CYP85A2 76 1.72% CYP71 76 1.72% STR 75 1.7% TRI/TRII 72 1.63% CSE 70 1.58% H6H 66 1.49% TPS 64 1.45% CAS 60 1.36% CAD 57 1.29% GES 50 1.13% COMT 50 1.13% IFR 46 1.04% LAC 44 1.0% ANR 39 0.88% T16H 37 0.84% 16OMT 36 0.81% F5H/CYP84A 36 0.81% RAS 35 0.79% CYP90D1 32 0.72% IO 30 0.68% SLS 29 0.66% TAT 29 0.66% G8O/G8H 26 0.59% CCR 26 0.59% GS 25 0.57% LAMT 25 0.57% PYKS 23 0.52% F3'5'H/CYP75A 22 0.5% 8HGO 21 0.48% PAL 21 0.48% HCT 19 0.43% CPR 19 0.43% CPD/CYP90A1 19 0.43% FPPS 19 0.43% 7DLH 18 0.41% CYP51G1 17 0.38% AACT 17 0.38% ANS/LDOX 16 0.36% BR6OX1/CYP85A1 16 0.36% FNS 15 0.34% BBE 14 0.32% NCS 14 0.32% CCoAOMT 14 0.32% COR 13 0.29% PMT 13 0.29% ROT3/CYP90C1 12 0.27% SQE 11 0.25% CHS 10 0.23% SQS/FDFT1 10 0.23% SMO1/SMO2 9 0.2% GGPPS 9 0.2% HMGR 9 0.2% MPO 8 0.18% CYP80B1 8 0.18% MVD 8 0.18% CNMT 7 0.16% DFR 7 0.16% HPPR 7 0.16% TYDC_DDC 6 0.14% ISY 6 0.14% DET2 6 0.14% DWF7 6 0.14% MCT/IspD 6 0.14% IDI 6 0.14% FLS 5 0.11% CHI 5 0.11% MVK 5 0.11% PMK 5 0.11% TDC 4 0.09% CYP719 4 0.09% DXS 4 0.09% CMK/IspE 3 0.07% HDR/IspH 3 0.07% HMGS 3 0.07% 6OMT_4OMT_SOMT 2 0.05% CPI1 2 0.05% HYD1 2 0.05% DWF1 2 0.05% DWF5 2 0.05% DXR 2 0.05% MDS/IspF 2 0.05% ADC 1 0.02% XMT_MXMT_DXMT 1 0.02% FK 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
raphanus_raphanistrum_GWHPANWN001722 Alkaloid TYDC_DDC medium pass TYDC_DDC__00001__sp_A0AA51Z3J4_TYDC2_LOPWI
raphanus_raphanistrum_GWHPANWN001723 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
raphanus_raphanistrum_GWHPANWN003949 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
raphanus_raphanistrum_GWHPANWN003950 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
raphanus_raphanistrum_GWHPANWN007664 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
raphanus_raphanistrum_GWHPANWN045616 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH