PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN000101 Alkaloid IO medium pass
raphanus_raphanistrum_GWHPANWN004735 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN007064 Alkaloid IO medium pass
raphanus_raphanistrum_GWHPANWN008166 Alkaloid IO medium pass
raphanus_raphanistrum_GWHPANWN009208 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN009209 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN009265 Alkaloid IO high pass
raphanus_raphanistrum_GWHPANWN009269 Alkaloid IO medium pass
raphanus_raphanistrum_GWHPANWN010321 Alkaloid IO low borderline
raphanus_raphanistrum_GWHPANWN019599 Alkaloid IO medium pass
raphanus_raphanistrum_GWHPANWN019634 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN021850 Alkaloid IO medium pass
raphanus_raphanistrum_GWHPANWN021895 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN022842 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN025242 Alkaloid IO medium pass
raphanus_raphanistrum_GWHPANWN026628 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN027162 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN027254 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN028353 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN029619 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN030832 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN035701 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN036773 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN036777 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN036840 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN038290 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN040288 Alkaloid IO medium pass
raphanus_raphanistrum_GWHPANWN040312 Alkaloid IO low borderline
raphanus_raphanistrum_GWHPANWN040595 Alkaloid IO medium borderline
raphanus_raphanistrum_GWHPANWN045730 Alkaloid IO medium pass