PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN025969 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN026090 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN026182 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN026592 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN027404 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN028049 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN028091 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN028309 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN028310 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN028610 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN028703 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN029382 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN030613 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN030614 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN032109 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN032110 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN032139 Alkaloid CODM/T6ODM low borderline
raphanus_raphanistrum_GWHPANWN032525 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN032717 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN034828 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN035655 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN035764 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN036017 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN036422 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN036548 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN036611 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN036914 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN037148 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN039201 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN040215 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN040216 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN040457 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN040458 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN043306 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN044588 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN045326 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN045770 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN045817 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN046488 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN046989 Alkaloid CODM/T6ODM medium borderline
raphanus_raphanistrum_GWHPANWN048451 Alkaloid CODM/T6ODM medium borderline