PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
raphanus_raphanistrum_GWHPANWN032075 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN032076 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN033592 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
raphanus_raphanistrum_GWHPANWN033840 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
raphanus_raphanistrum_GWHPANWN034229 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN034836 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN034889 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN036175 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN036443 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN038636 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN039200 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
raphanus_raphanistrum_GWHPANWN040059 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN040720 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
raphanus_raphanistrum_GWHPANWN040995 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
raphanus_raphanistrum_GWHPANWN040996 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
raphanus_raphanistrum_GWHPANWN041777 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN041956 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN043906 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN044566 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
raphanus_raphanistrum_GWHPANWN046297 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL