Raphanus raphanistrum (raphanus_raphanistrum)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 29.12% Phenylpropanoid pathway 24.22% Alkaloid pathway 22.51% Flavonoid pathway 8.55% Steroid pathway 7.92% Rosmarinic acid pathway 7.69%

Family Distribution

1755 Candidate Genes

BAHD 6.59% C4H 5.82% C3'H/CYP98A 5.75% POD 4.71% CYP76 3.94% 4CL 3.6% IFS 3.58% T3O 3.42%

Other Families 62.62%

More Families (96)

F3H 147 3.33% DWF4/CYP90B1 120 2.72% NMT 117 2.65% F3'H/CYP75B 96 2.17% UGT 95 2.15% CODM/T6ODM 91 2.06% 7DLGT 90 2.04% UFGT 89 2.01% SMT1/SMT2/SMT3 86 1.95% SGD 84 1.9% BR6OX2/CYP85A2 76 1.72% CYP71 76 1.72% STR 75 1.7% TRI/TRII 72 1.63% CSE 70 1.58% H6H 66 1.49% TPS 64 1.45% CAS 60 1.36% CAD 57 1.29% GES 50 1.13% COMT 50 1.13% IFR 46 1.04% LAC 44 1.0% ANR 39 0.88% T16H 37 0.84% 16OMT 36 0.81% F5H/CYP84A 36 0.81% RAS 35 0.79% CYP90D1 32 0.72% IO 30 0.68% SLS 29 0.66% TAT 29 0.66% G8O/G8H 26 0.59% CCR 26 0.59% GS 25 0.57% LAMT 25 0.57% PYKS 23 0.52% F3'5'H/CYP75A 22 0.5% 8HGO 21 0.48% PAL 21 0.48% HCT 19 0.43% CPR 19 0.43% CPD/CYP90A1 19 0.43% FPPS 19 0.43% 7DLH 18 0.41% CYP51G1 17 0.38% AACT 17 0.38% ANS/LDOX 16 0.36% BR6OX1/CYP85A1 16 0.36% FNS 15 0.34% BBE 14 0.32% NCS 14 0.32% CCoAOMT 14 0.32% COR 13 0.29% PMT 13 0.29% ROT3/CYP90C1 12 0.27% SQE 11 0.25% CHS 10 0.23% SQS/FDFT1 10 0.23% SMO1/SMO2 9 0.2% GGPPS 9 0.2% HMGR 9 0.2% MPO 8 0.18% CYP80B1 8 0.18% MVD 8 0.18% CNMT 7 0.16% DFR 7 0.16% HPPR 7 0.16% TYDC_DDC 6 0.14% ISY 6 0.14% DET2 6 0.14% DWF7 6 0.14% MCT/IspD 6 0.14% IDI 6 0.14% FLS 5 0.11% CHI 5 0.11% MVK 5 0.11% PMK 5 0.11% TDC 4 0.09% CYP719 4 0.09% DXS 4 0.09% CMK/IspE 3 0.07% HDR/IspH 3 0.07% HMGS 3 0.07% 6OMT_4OMT_SOMT 2 0.05% CPI1 2 0.05% HYD1 2 0.05% DWF1 2 0.05% DWF5 2 0.05% DXR 2 0.05% MDS/IspF 2 0.05% ADC 1 0.02% XMT_MXMT_DXMT 1 0.02% FK 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	511	20	BAHD (229)	View species results
Phenylpropanoid pathway	425	11	POD (190)	View species results
Alkaloid pathway	395	20	SGD (76)	View species results
Flavonoid pathway	150	10	UFGT (85)	View species results
Steroid pathway	139	11	SMT1/SMT2/SMT3 (57)	View species results
Rosmarinic acid pathway	135	7	C4H (53)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	1668	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	345	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: CYP76

Gene	Pathway	Family	Confidence	Status	Best Target
raphanus_raphanistrum_GWHPANWN037144	Terpenoid	CYP76	medium	borderline	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
raphanus_raphanistrum_GWHPANWN038290	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
raphanus_raphanistrum_GWHPANWN038390	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
raphanus_raphanistrum_GWHPANWN038631	Terpenoid	CYP76	medium	borderline	CYP76__00016__sp_P0DXJ6_C7631_LOPWI
raphanus_raphanistrum_GWHPANWN040048	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
raphanus_raphanistrum_GWHPANWN040288	Terpenoid	CYP76	low	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
raphanus_raphanistrum_GWHPANWN040312	Terpenoid	CYP76	low	borderline	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
raphanus_raphanistrum_GWHPANWN040487	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
raphanus_raphanistrum_GWHPANWN040595	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
raphanus_raphanistrum_GWHPANWN040887	Terpenoid	CYP76	medium	pass	CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
raphanus_raphanistrum_GWHPANWN041269	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
raphanus_raphanistrum_GWHPANWN042468	Terpenoid	CYP76	low	borderline	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
raphanus_raphanistrum_GWHPANWN042469	Terpenoid	CYP76	low	borderline	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
raphanus_raphanistrum_GWHPANWN042556	Terpenoid	CYP76	low	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
raphanus_raphanistrum_GWHPANWN042773	Terpenoid	CYP76	medium	borderline	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
raphanus_raphanistrum_GWHPANWN043003	Terpenoid	CYP76	medium	pass	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
raphanus_raphanistrum_GWHPANWN043643	Terpenoid	CYP76	low	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
raphanus_raphanistrum_GWHPANWN044365	Terpenoid	CYP76	medium	borderline	CYP76__00014__sp_I3PFJ5_C76AD_BETVU
raphanus_raphanistrum_GWHPANWN044897	Terpenoid	CYP76	low	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
raphanus_raphanistrum_GWHPANWN045730	Terpenoid	CYP76	low	borderline	CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
raphanus_raphanistrum_GWHPANWN045859	Terpenoid	CYP76	low	borderline	CYP76__00016__sp_P0DXJ6_C7631_LOPWI
raphanus_raphanistrum_GWHPANWN046310	Terpenoid	CYP76	medium	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
raphanus_raphanistrum_GWHPANWN047452	Terpenoid	CYP76	medium	borderline	CYP76__00013__sp_D1MI46_C76BA_SWEMU
raphanus_raphanistrum_GWHPANWN048688	Terpenoid	CYP76	low	borderline	CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI