PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN000458 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN001334 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN001694 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN002259 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN002380 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN002442 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN002603 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN003467 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN003877 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN004946 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN005124 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN005634 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN005980 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN005981 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN005982 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN006085 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN006135 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN006228 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN006428 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN007941 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN007948 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN008153 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN008265 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN008582 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN008621 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN008622 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN008996 Flavonoid F3H medium pass
raphanus_raphanistrum_GWHPANWN009189 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN009202 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN009251 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN010329 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN010367 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN010864 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN010896 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN011714 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN011879 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN011880 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN011881 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012089 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012137 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012740 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012885 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012886 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012887 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012888 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012889 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012890 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN013568 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN013642 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN014219 Flavonoid F3H low borderline