PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN014950 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN014953 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN015148 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN015150 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN020234 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN020244 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN020245 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN020369 Flavonoid F3H medium pass
raphanus_raphanistrum_GWHPANWN020403 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN020485 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN020821 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN021074 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN023350 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN023351 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN023654 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN023973 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN025738 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN025739 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN026090 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN026182 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN026592 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN027067 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN027404 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028049 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028091 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028309 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028310 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028610 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028703 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028704 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN029382 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN030035 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN030323 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN030613 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN030614 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN030907 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN031902 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN032109 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN032110 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN032139 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN032377 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN032525 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN032717 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN033582 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN033585 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN033587 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN033831 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN033834 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN033835 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN033836 Flavonoid F3H low borderline