PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN001948 Terpenoid TPS low borderline
raphanus_raphanistrum_GWHPANWN001949 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN003236 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN003682 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN003795 Terpenoid TPS low borderline
raphanus_raphanistrum_GWHPANWN004081 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN004148 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN004149 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN006033 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN006034 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN008319 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN008585 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN009626 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN010327 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN013107 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN013975 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN014654 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN014655 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN014656 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN014744 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN014745 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN014746 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN014967 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN015167 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN015168 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN015401 Terpenoid TPS low borderline
raphanus_raphanistrum_GWHPANWN015971 Terpenoid TPS low borderline
raphanus_raphanistrum_GWHPANWN021021 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN021022 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN021024 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN021025 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN022870 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN022872 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN023046 Terpenoid TPS low borderline
raphanus_raphanistrum_GWHPANWN023049 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN023051 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN023492 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN023561 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN023562 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN023563 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN023790 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN023871 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN023873 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN024217 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN024421 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN025514 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN028138 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN028139 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN038633 Terpenoid TPS medium pass
raphanus_raphanistrum_GWHPANWN042661 Terpenoid TPS medium pass