PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

2293
Candidate Protein Records
1755
Pathway-Level Records
4419
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN004499 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN004527 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN004530 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN011233 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN013018 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN013723 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN014049 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN015145 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN019686 Alkaloid T16H low borderline
raphanus_raphanistrum_GWHPANWN020506 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN020507 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN022025 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN022819 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN022826 Alkaloid T16H medium pass
raphanus_raphanistrum_GWHPANWN025273 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN025711 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN025712 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN026646 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN027677 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN027918 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN028354 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN028355 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN029081 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN029171 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN032018 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN036039 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN036040 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN038390 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN038631 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN043575 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN043578 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN043643 Alkaloid T16H medium borderline
raphanus_raphanistrum_GWHPANWN044897 Alkaloid T16H medium pass
raphanus_raphanistrum_GWHPANWN000178 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN000271 Alkaloid T3O low borderline
raphanus_raphanistrum_GWHPANWN000396 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN000397 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN000596 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN001244 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN001443 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN001664 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN001665 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN001869 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN001870 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN001945 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN002722 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN002766 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN002770 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN002771 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN002772 Alkaloid T3O medium borderline