PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN046188 Flavonoid 4CL medium pass
raphanus_raphanistrum_GWHPANWN046189 Flavonoid 4CL medium pass
raphanus_raphanistrum_GWHPANWN046404 Flavonoid 4CL low borderline
raphanus_raphanistrum_GWHPANWN000189 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN000423 Flavonoid ANR medium pass
raphanus_raphanistrum_GWHPANWN000424 Flavonoid ANR medium pass
raphanus_raphanistrum_GWHPANWN002578 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN004431 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN005472 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN008224 Flavonoid ANR low borderline
raphanus_raphanistrum_GWHPANWN008895 Flavonoid ANR low borderline
raphanus_raphanistrum_GWHPANWN011222 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN011861 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN012689 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN019833 Flavonoid ANR medium pass
raphanus_raphanistrum_GWHPANWN020141 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN020458 Flavonoid ANR low borderline
raphanus_raphanistrum_GWHPANWN024454 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN024669 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN025915 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN026618 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN029368 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN029518 Flavonoid ANR low borderline
raphanus_raphanistrum_GWHPANWN029519 Flavonoid ANR low borderline
raphanus_raphanistrum_GWHPANWN030476 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN034212 Flavonoid ANR low borderline
raphanus_raphanistrum_GWHPANWN034213 Flavonoid ANR low borderline
raphanus_raphanistrum_GWHPANWN034666 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN035052 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN035734 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN036210 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN036870 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN036880 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN040905 Flavonoid ANR low borderline
raphanus_raphanistrum_GWHPANWN041218 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN041219 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN041441 Flavonoid ANR low borderline
raphanus_raphanistrum_GWHPANWN041696 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN044551 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN047556 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN048163 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN048406 Flavonoid ANR medium borderline
raphanus_raphanistrum_GWHPANWN001115 Flavonoid ANS/LDOX medium borderline
raphanus_raphanistrum_GWHPANWN002348 Flavonoid ANS/LDOX medium borderline
raphanus_raphanistrum_GWHPANWN002349 Flavonoid ANS/LDOX medium borderline
raphanus_raphanistrum_GWHPANWN006509 Flavonoid ANS/LDOX medium borderline
raphanus_raphanistrum_GWHPANWN011785 Flavonoid ANS/LDOX medium borderline
raphanus_raphanistrum_GWHPANWN013835 Flavonoid ANS/LDOX medium borderline
raphanus_raphanistrum_GWHPANWN021690 Flavonoid ANS/LDOX medium borderline
raphanus_raphanistrum_GWHPANWN021998 Flavonoid ANS/LDOX medium borderline