PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

2293
Candidate Protein Records
1755
Pathway-Level Records
4419
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN002795 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN004126 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN004522 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN004524 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN004525 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN004526 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN004528 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN004529 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN004682 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN004929 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN004932 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN004995 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN005517 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN005518 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN005703 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN006081 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN006498 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN006499 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN006886 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN006893 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN007001 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN007004 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN007008 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN007009 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN007468 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN007469 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN008320 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN008391 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN008649 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN008668 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN008906 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN009249 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN009272 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN010707 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN012075 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN012093 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN012932 Alkaloid T3O low borderline
raphanus_raphanistrum_GWHPANWN013475 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN013901 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN014028 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN014030 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN015031 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN015034 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN015036 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN019557 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN019635 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN019636 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN019693 Alkaloid T3O medium borderline
raphanus_raphanistrum_GWHPANWN020535 Alkaloid T3O medium pass
raphanus_raphanistrum_GWHPANWN020615 Alkaloid T3O medium borderline