Raphanus raphanistrum (raphanus_raphanistrum)
Imported from atlas release summary for Raphanus raphanistrum.
2293
Candidate Protein Records
1755
Pathway-Level Records
4419
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4419
Family-Level Calls
BAHD
6.59%
C4H
5.82%
C3'H/CYP98A
5.75%
POD
4.71%
CYP76
3.94%
4CL
3.6%
IFS
3.58%
T3O
3.42%
Other Families
62.62%
More Families (96)
F3H
147
3.33%
DWF4/CYP90B1
120
2.72%
NMT
117
2.65%
F3'H/CYP75B
96
2.17%
UGT
95
2.15%
CODM/T6ODM
91
2.06%
7DLGT
90
2.04%
UFGT
89
2.01%
SMT1/SMT2/SMT3
86
1.95%
SGD
84
1.9%
BR6OX2/CYP85A2
76
1.72%
CYP71
76
1.72%
STR
75
1.7%
TRI/TRII
72
1.63%
CSE
70
1.58%
H6H
66
1.49%
TPS
64
1.45%
CAS
60
1.36%
CAD
57
1.29%
GES
50
1.13%
COMT
50
1.13%
IFR
46
1.04%
LAC
44
1.0%
ANR
39
0.88%
T16H
37
0.84%
16OMT
36
0.81%
F5H/CYP84A
36
0.81%
RAS
35
0.79%
CYP90D1
32
0.72%
IO
30
0.68%
SLS
29
0.66%
TAT
29
0.66%
G8O/G8H
26
0.59%
CCR
26
0.59%
GS
25
0.57%
LAMT
25
0.57%
PYKS
23
0.52%
F3'5'H/CYP75A
22
0.5%
8HGO
21
0.48%
PAL
21
0.48%
HCT
19
0.43%
CPR
19
0.43%
CPD/CYP90A1
19
0.43%
FPPS
19
0.43%
7DLH
18
0.41%
CYP51G1
17
0.38%
AACT
17
0.38%
ANS/LDOX
16
0.36%
BR6OX1/CYP85A1
16
0.36%
FNS
15
0.34%
BBE
14
0.32%
NCS
14
0.32%
CCoAOMT
14
0.32%
COR
13
0.29%
PMT
13
0.29%
ROT3/CYP90C1
12
0.27%
SQE
11
0.25%
CHS
10
0.23%
SQS/FDFT1
10
0.23%
SMO1/SMO2
9
0.2%
GGPPS
9
0.2%
HMGR
9
0.2%
MPO
8
0.18%
CYP80B1
8
0.18%
MVD
8
0.18%
CNMT
7
0.16%
DFR
7
0.16%
HPPR
7
0.16%
TYDC_DDC
6
0.14%
ISY
6
0.14%
DET2
6
0.14%
DWF7
6
0.14%
MCT/IspD
6
0.14%
IDI
6
0.14%
FLS
5
0.11%
CHI
5
0.11%
MVK
5
0.11%
PMK
5
0.11%
TDC
4
0.09%
CYP719
4
0.09%
DXS
4
0.09%
CMK/IspE
3
0.07%
HDR/IspH
3
0.07%
HMGS
3
0.07%
6OMT_4OMT_SOMT
2
0.05%
CPI1
2
0.05%
HYD1
2
0.05%
DWF1
2
0.05%
DWF5
2
0.05%
DXR
2
0.05%
MDS/IspF
2
0.05%
ADC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
FK
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 511 | 20 | BAHD (229) | View species results |
| Phenylpropanoid pathway | 425 | 11 | POD (190) | View species results |
| Alkaloid pathway | 395 | 20 | SGD (76) | View species results |
| Flavonoid pathway | 150 | 10 | UFGT (85) | View species results |
| Steroid pathway | 139 | 11 | SMT1/SMT2/SMT3 (57) | View species results |
| Rosmarinic acid pathway | 135 | 7 | C4H (53) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1668 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 345 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| raphanus_raphanistrum_GWHPANWN041374 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| raphanus_raphanistrum_GWHPANWN041762 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| raphanus_raphanistrum_GWHPANWN042869 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| raphanus_raphanistrum_GWHPANWN043868 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| raphanus_raphanistrum_GWHPANWN043869 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| raphanus_raphanistrum_GWHPANWN044505 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| raphanus_raphanistrum_GWHPANWN046088 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| raphanus_raphanistrum_GWHPANWN046281 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| raphanus_raphanistrum_GWHPANWN046882 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| raphanus_raphanistrum_GWHPANWN048516 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| raphanus_raphanistrum_GWHPANWN001722 | Alkaloid | TYDC_DDC | medium | pass | TYDC_DDC__00001__sp_A0AA51Z3J4_TYDC2_LOPWI |
| raphanus_raphanistrum_GWHPANWN001723 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| raphanus_raphanistrum_GWHPANWN003949 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| raphanus_raphanistrum_GWHPANWN003950 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| raphanus_raphanistrum_GWHPANWN007664 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| raphanus_raphanistrum_GWHPANWN045616 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| raphanus_raphanistrum_GWHPANWN014158 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |