PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

2293
Candidate Protein Records
1755
Pathway-Level Records
4419
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN009202 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN009251 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN010329 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN010367 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN010864 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN010896 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN011714 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN011879 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN011880 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN011881 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012089 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012137 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012740 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012885 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012886 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012887 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012888 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012889 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN012890 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN013568 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN013642 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN014219 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN014950 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN014953 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN015148 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN015150 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN020234 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN020244 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN020245 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN020369 Flavonoid F3H medium pass
raphanus_raphanistrum_GWHPANWN020403 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN020485 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN020821 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN021074 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN023350 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN023351 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN023654 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN023973 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN025738 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN025739 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN026090 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN026182 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN026592 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN027067 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN027404 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028049 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028091 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028309 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028310 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN028610 Flavonoid F3H medium borderline