PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

1755
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN048342 Steroid CAS medium pass
raphanus_raphanistrum_GWHPANWN048375 Steroid CAS medium pass
raphanus_raphanistrum_GWHPANWN000305 Steroid CPD/CYP90A1 medium borderline
raphanus_raphanistrum_GWHPANWN001572 Steroid CPD/CYP90A1 medium borderline
raphanus_raphanistrum_GWHPANWN004126 Steroid CPD/CYP90A1 medium borderline
raphanus_raphanistrum_GWHPANWN004524 Steroid CPD/CYP90A1 medium borderline
raphanus_raphanistrum_GWHPANWN004630 Steroid CPD/CYP90A1 low borderline
raphanus_raphanistrum_GWHPANWN007007 Steroid CPD/CYP90A1 low borderline
raphanus_raphanistrum_GWHPANWN007009 Steroid CPD/CYP90A1 medium borderline
raphanus_raphanistrum_GWHPANWN022023 Steroid CPD/CYP90A1 medium borderline
raphanus_raphanistrum_GWHPANWN022821 Steroid CPD/CYP90A1 medium borderline
raphanus_raphanistrum_GWHPANWN027203 Steroid CPD/CYP90A1 low borderline
raphanus_raphanistrum_GWHPANWN028324 Steroid CPD/CYP90A1 medium borderline
raphanus_raphanistrum_GWHPANWN028691 Steroid CPD/CYP90A1 low borderline
raphanus_raphanistrum_GWHPANWN035596 Steroid CPD/CYP90A1 low borderline
raphanus_raphanistrum_GWHPANWN037964 Steroid CPD/CYP90A1 medium borderline
raphanus_raphanistrum_GWHPANWN043420 Steroid CPD/CYP90A1 low borderline
raphanus_raphanistrum_GWHPANWN043609 Steroid CPD/CYP90A1 low borderline
raphanus_raphanistrum_GWHPANWN043610 Steroid CPD/CYP90A1 low borderline
raphanus_raphanistrum_GWHPANWN044264 Steroid CPD/CYP90A1 low borderline
raphanus_raphanistrum_GWHPANWN044664 Steroid CPD/CYP90A1 medium borderline
raphanus_raphanistrum_GWHPANWN001995 Steroid CPI1 high pass
raphanus_raphanistrum_GWHPANWN014781 Steroid CPI1 high pass
raphanus_raphanistrum_GWHPANWN006499 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN006893 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN008166 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN014030 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN019557 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN019693 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN020506 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN020507 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN026629 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN027918 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN028945 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN029171 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN036039 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN036040 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN038390 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN043579 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN043643 Steroid CYP51G1 medium borderline
raphanus_raphanistrum_GWHPANWN000178 Steroid CYP90D1 low borderline
raphanus_raphanistrum_GWHPANWN001870 Steroid CYP90D1 medium borderline
raphanus_raphanistrum_GWHPANWN006081 Steroid CYP90D1 medium borderline
raphanus_raphanistrum_GWHPANWN008649 Steroid CYP90D1 low borderline
raphanus_raphanistrum_GWHPANWN009209 Steroid CYP90D1 low borderline
raphanus_raphanistrum_GWHPANWN009249 Steroid CYP90D1 medium borderline
raphanus_raphanistrum_GWHPANWN011426 Steroid CYP90D1 low borderline
raphanus_raphanistrum_GWHPANWN012075 Steroid CYP90D1 medium borderline
raphanus_raphanistrum_GWHPANWN012093 Steroid CYP90D1 medium borderline
raphanus_raphanistrum_GWHPANWN013291 Steroid CYP90D1 low borderline