PlantSME Plant secondary metabolism enzyme database

Raphanus raphanistrum (raphanus_raphanistrum)

Imported from atlas release summary for Raphanus raphanistrum.

2293
Candidate Protein Records
1755
Pathway-Level Records
4419
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 511 20 BAHD (229) View species results
Phenylpropanoid pathway 425 11 POD (190) View species results
Alkaloid pathway 395 20 SGD (76) View species results
Flavonoid pathway 150 10 UFGT (85) View species results
Steroid pathway 139 11 SMT1/SMT2/SMT3 (57) View species results
Rosmarinic acid pathway 135 7 C4H (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1668 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 345 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
raphanus_raphanistrum_GWHPANWN033587 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN033831 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN033834 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN033835 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN033836 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN035655 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN035764 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN035888 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN035889 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN035949 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN036017 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN036423 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN036469 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN036548 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN036611 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN036612 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN036671 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN036914 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN037020 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN037021 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN037079 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN037148 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN039201 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN040215 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN040216 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN040457 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN040458 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN040541 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN042797 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN042812 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN043306 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN043542 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN043543 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN043544 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN044006 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN044007 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN044074 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN044242 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN044243 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN044245 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN044247 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN044588 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN044767 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN044768 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN045326 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN045345 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN045817 Flavonoid F3H medium pass
raphanus_raphanistrum_GWHPANWN046081 Flavonoid F3H low borderline
raphanus_raphanistrum_GWHPANWN046488 Flavonoid F3H medium borderline
raphanus_raphanistrum_GWHPANWN046989 Flavonoid F3H medium borderline