PlantSME Plant secondary metabolism enzyme database

Rosa chinensis (rosa_chinensis)

Imported from atlas release summary for Rosa chinensis.

2548
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.95% Alkaloid pathway 21.7% Phenylpropanoid pathway 19.51% Flavonoid pathway 12.99% Rosmarinic acid pathway 8.67% Steroid pathway 7.18%
Family Distribution
C4H 6.76% C3'H/CYP98A 6.03% UGT 5.21% BAHD 4.6% 7DLGT 4.51% UFGT 4.45% IFS 4.08% CYP76 3.84%
Other Families 60.52%
More Families (98)
4CL 192 3.17% T3O 191 3.16% POD 168 2.78% F3H 162 2.68% BR6OX2/CYP85A2 143 2.36% CAD 135 2.23% DWF4/CYP90B1 132 2.18% F3'H/CYP75B 121 2.0% H6H 114 1.88% CAS 100 1.65% NMT 92 1.52% LAC 87 1.44% STR 82 1.36% CYP71 81 1.34% CODM/T6ODM 79 1.31% TPS 77 1.27% GES 71 1.17% CYP90D1 71 1.17% GS 70 1.16% CSE 69 1.14% SMT1/SMT2/SMT3 68 1.12% TRI/TRII 65 1.07% 7DLH 60 0.99% G8O/G8H 57 0.94% SLS 56 0.93% HCT 54 0.89% TAT 48 0.79% SGD 43 0.71% ANR 42 0.69% T16H 41 0.68% F3'5'H/CYP75A 41 0.68% COMT 40 0.66% SQE 40 0.66% IO 39 0.64% PMT 38 0.63% RAS 37 0.61% IFR 35 0.58% BBE 33 0.55% LAMT 32 0.53% F5H/CYP84A 31 0.51% 16OMT 27 0.45% CCR 27 0.45% COR 26 0.43% NCS 25 0.41% FNS 25 0.41% PYKS 24 0.4% 8HGO 21 0.35% BR6OX1/CYP85A1 21 0.35% CCoAOMT 20 0.33% DFR 18 0.3% ROT3/CYP90C1 18 0.3% CYP51G1 18 0.3% CNMT 16 0.26% GGPPS 16 0.26% ANS/LDOX 14 0.23% CPD/CYP90A1 14 0.23% HPPR 13 0.21% CYP719 11 0.18% MPO 11 0.18% CYP80B1 10 0.17% ODC 10 0.17% HMGR 10 0.17% CHS 9 0.15% PAL 9 0.15% MVK 9 0.15% ISY 8 0.13% CPR 8 0.13% DXS 8 0.13% AACT 7 0.12% DET2 6 0.1% FPPS 6 0.1% TYDC_DDC 5 0.08% SQS/FDFT1 5 0.08% 6OMT_4OMT_SOMT 4 0.07% FLS 4 0.07% CHI 3 0.05% SMO1/SMO2 3 0.05% HDR/IspH 3 0.05% DXR 3 0.05% MVD 3 0.05% MCT/IspD 3 0.05% XMT_MXMT_DXMT 2 0.03% CYP80F1 2 0.03% DWF5 2 0.03% HDS/IspG 2 0.03% CMK/IspE 2 0.03% GPPS 2 0.03% ADC 1 0.02% TDC 1 0.02% FK 1 0.02% HYD1 1 0.02% DWF1 1 0.02% DWF7 1 0.02% CPI1 1 0.02% IDI 1 0.02% MDS/IspF 1 0.02% HMGS 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 763 20 UGT (301) View species results
Alkaloid pathway 553 25 7DLGT (133) View species results
Phenylpropanoid pathway 497 12 POD (154) View species results
Flavonoid pathway 331 12 UFGT (247) View species results
Rosmarinic acid pathway 221 7 C4H (98) View species results
Steroid pathway 183 14 CAS (86) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2411 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 369 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP80F1
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Gene Pathway Family Confidence Status Best Target
ROchi02G0048570.1 Alkaloid CYP80F1 medium borderline CYP80F1__00001__tr_A0A024CI64_A0A024CI64_ATRBE
ROchi04G0022940.1 Alkaloid CYP80F1 medium borderline CYP80F1__00001__tr_A0A024CI64_A0A024CI64_ATRBE