Rosa chinensis (rosa_chinensis)
Imported from atlas release summary for Rosa chinensis.
2548
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2548
Candidate Genes
C4H
6.76%
C3'H/CYP98A
6.03%
UGT
5.21%
BAHD
4.6%
7DLGT
4.51%
UFGT
4.45%
IFS
4.08%
CYP76
3.84%
Other Families
60.52%
More Families (98)
4CL
192
3.17%
T3O
191
3.16%
POD
168
2.78%
F3H
162
2.68%
BR6OX2/CYP85A2
143
2.36%
CAD
135
2.23%
DWF4/CYP90B1
132
2.18%
F3'H/CYP75B
121
2.0%
H6H
114
1.88%
CAS
100
1.65%
NMT
92
1.52%
LAC
87
1.44%
STR
82
1.36%
CYP71
81
1.34%
CODM/T6ODM
79
1.31%
TPS
77
1.27%
GES
71
1.17%
CYP90D1
71
1.17%
GS
70
1.16%
CSE
69
1.14%
SMT1/SMT2/SMT3
68
1.12%
TRI/TRII
65
1.07%
7DLH
60
0.99%
G8O/G8H
57
0.94%
SLS
56
0.93%
HCT
54
0.89%
TAT
48
0.79%
SGD
43
0.71%
ANR
42
0.69%
T16H
41
0.68%
F3'5'H/CYP75A
41
0.68%
COMT
40
0.66%
SQE
40
0.66%
IO
39
0.64%
PMT
38
0.63%
RAS
37
0.61%
IFR
35
0.58%
BBE
33
0.55%
LAMT
32
0.53%
F5H/CYP84A
31
0.51%
16OMT
27
0.45%
CCR
27
0.45%
COR
26
0.43%
NCS
25
0.41%
FNS
25
0.41%
PYKS
24
0.4%
8HGO
21
0.35%
BR6OX1/CYP85A1
21
0.35%
CCoAOMT
20
0.33%
DFR
18
0.3%
ROT3/CYP90C1
18
0.3%
CYP51G1
18
0.3%
CNMT
16
0.26%
GGPPS
16
0.26%
ANS/LDOX
14
0.23%
CPD/CYP90A1
14
0.23%
HPPR
13
0.21%
CYP719
11
0.18%
MPO
11
0.18%
CYP80B1
10
0.17%
ODC
10
0.17%
HMGR
10
0.17%
CHS
9
0.15%
PAL
9
0.15%
MVK
9
0.15%
ISY
8
0.13%
CPR
8
0.13%
DXS
8
0.13%
AACT
7
0.12%
DET2
6
0.1%
FPPS
6
0.1%
TYDC_DDC
5
0.08%
SQS/FDFT1
5
0.08%
6OMT_4OMT_SOMT
4
0.07%
FLS
4
0.07%
CHI
3
0.05%
SMO1/SMO2
3
0.05%
HDR/IspH
3
0.05%
DXR
3
0.05%
MVD
3
0.05%
MCT/IspD
3
0.05%
XMT_MXMT_DXMT
2
0.03%
CYP80F1
2
0.03%
DWF5
2
0.03%
HDS/IspG
2
0.03%
CMK/IspE
2
0.03%
GPPS
2
0.03%
ADC
1
0.02%
TDC
1
0.02%
FK
1
0.02%
HYD1
1
0.02%
DWF1
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 763 | 20 | UGT (301) | View species results |
| Alkaloid pathway | 553 | 25 | 7DLGT (133) | View species results |
| Phenylpropanoid pathway | 497 | 12 | POD (154) | View species results |
| Flavonoid pathway | 331 | 12 | UFGT (247) | View species results |
| Rosmarinic acid pathway | 221 | 7 | C4H (98) | View species results |
| Steroid pathway | 183 | 14 | CAS (86) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2411 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 369 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| ROchi00G0006480.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| ROchi01G0002720.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| ROchi01G0009340.1 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| ROchi01G0009380.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| ROchi01G0011490.1 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| ROchi01G0011500.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| ROchi01G0012060.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| ROchi01G0027460.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| ROchi01G0030840.1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| ROchi01G0030920.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| ROchi01G0033260.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| ROchi01G0034690.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| ROchi01G0040220.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| ROchi01G0044980.1 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| ROchi01G0050750.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| ROchi01G0050930.1 | Alkaloid | NMT | medium | borderline | NMT__00065__sp_Q9SEH7_PMT2_TOBAC |
| ROchi01G0051380.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| ROchi02G0000050.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| ROchi02G0004210.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| ROchi02G0007250.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| ROchi02G0012640.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| ROchi02G0012650.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| ROchi02G0015710.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| ROchi02G0018060.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| ROchi02G0026750.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| ROchi02G0032190.1 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| ROchi02G0035650.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| ROchi02G0037340.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| ROchi02G0049600.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| ROchi02G0049910.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| ROchi02G0050500.1 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| ROchi02G0062260.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| ROchi03G0000670.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| ROchi03G0000760.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| ROchi03G0005220.1 | Alkaloid | NMT | medium | pass | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| ROchi03G0010400.1 | Alkaloid | NMT | medium | borderline | NMT__00003__sp_A0A1C9U5X5_RNMT_PAPSO |
| ROchi03G0019490.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| ROchi03G0019520.1 | Alkaloid | NMT | medium | borderline | NMT__00018__sp_I1M2U5_NAMT1_SOYBN |
| ROchi03G0020330.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| ROchi03G0035800.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| ROchi04G0005540.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| ROchi04G0005640.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| ROchi04G0005650.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| ROchi04G0005670.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| ROchi04G0005870.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| ROchi04G0006430.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| ROchi04G0011680.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| ROchi04G0014430.1 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| ROchi04G0015190.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| ROchi04G0016900.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |