Rosa chinensis (rosa_chinensis)
Imported from atlas release summary for Rosa chinensis.
2548
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2548
Candidate Genes
C4H
6.76%
C3'H/CYP98A
6.03%
UGT
5.21%
BAHD
4.6%
7DLGT
4.51%
UFGT
4.45%
IFS
4.08%
CYP76
3.84%
Other Families
60.52%
More Families (98)
4CL
192
3.17%
T3O
191
3.16%
POD
168
2.78%
F3H
162
2.68%
BR6OX2/CYP85A2
143
2.36%
CAD
135
2.23%
DWF4/CYP90B1
132
2.18%
F3'H/CYP75B
121
2.0%
H6H
114
1.88%
CAS
100
1.65%
NMT
92
1.52%
LAC
87
1.44%
STR
82
1.36%
CYP71
81
1.34%
CODM/T6ODM
79
1.31%
TPS
77
1.27%
GES
71
1.17%
CYP90D1
71
1.17%
GS
70
1.16%
CSE
69
1.14%
SMT1/SMT2/SMT3
68
1.12%
TRI/TRII
65
1.07%
7DLH
60
0.99%
G8O/G8H
57
0.94%
SLS
56
0.93%
HCT
54
0.89%
TAT
48
0.79%
SGD
43
0.71%
ANR
42
0.69%
T16H
41
0.68%
F3'5'H/CYP75A
41
0.68%
COMT
40
0.66%
SQE
40
0.66%
IO
39
0.64%
PMT
38
0.63%
RAS
37
0.61%
IFR
35
0.58%
BBE
33
0.55%
LAMT
32
0.53%
F5H/CYP84A
31
0.51%
16OMT
27
0.45%
CCR
27
0.45%
COR
26
0.43%
NCS
25
0.41%
FNS
25
0.41%
PYKS
24
0.4%
8HGO
21
0.35%
BR6OX1/CYP85A1
21
0.35%
CCoAOMT
20
0.33%
DFR
18
0.3%
ROT3/CYP90C1
18
0.3%
CYP51G1
18
0.3%
CNMT
16
0.26%
GGPPS
16
0.26%
ANS/LDOX
14
0.23%
CPD/CYP90A1
14
0.23%
HPPR
13
0.21%
CYP719
11
0.18%
MPO
11
0.18%
CYP80B1
10
0.17%
ODC
10
0.17%
HMGR
10
0.17%
CHS
9
0.15%
PAL
9
0.15%
MVK
9
0.15%
ISY
8
0.13%
CPR
8
0.13%
DXS
8
0.13%
AACT
7
0.12%
DET2
6
0.1%
FPPS
6
0.1%
TYDC_DDC
5
0.08%
SQS/FDFT1
5
0.08%
6OMT_4OMT_SOMT
4
0.07%
FLS
4
0.07%
CHI
3
0.05%
SMO1/SMO2
3
0.05%
HDR/IspH
3
0.05%
DXR
3
0.05%
MVD
3
0.05%
MCT/IspD
3
0.05%
XMT_MXMT_DXMT
2
0.03%
CYP80F1
2
0.03%
DWF5
2
0.03%
HDS/IspG
2
0.03%
CMK/IspE
2
0.03%
GPPS
2
0.03%
ADC
1
0.02%
TDC
1
0.02%
FK
1
0.02%
HYD1
1
0.02%
DWF1
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 763 | 20 | UGT (301) | View species results |
| Alkaloid pathway | 553 | 25 | 7DLGT (133) | View species results |
| Phenylpropanoid pathway | 497 | 12 | POD (154) | View species results |
| Flavonoid pathway | 331 | 12 | UFGT (247) | View species results |
| Rosmarinic acid pathway | 221 | 7 | C4H (98) | View species results |
| Steroid pathway | 183 | 14 | CAS (86) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2411 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 369 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| ROchi05G0009980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0025580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0028020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0038910.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ROchi05G0039780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0039870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0041180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0041260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0041290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0042700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0042710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0042720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0042760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0042780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0045640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0053880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi05G0058850.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi06G0018030.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ROchi06G0024220.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi06G0031600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi06G0031750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi06G0031780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi06G0039600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi06G0039610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi06G0039620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi06G0039630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi07G0001300.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi07G0021160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi07G0028180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi07G0033730.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi07G0035880.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ROchi07G0036040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |