Rosa chinensis (rosa_chinensis)
Imported from atlas release summary for Rosa chinensis.
2770
Candidate Protein Records
2548
Pathway-Level Records
6049
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
6049
Family-Level Calls
C4H
6.76%
C3'H/CYP98A
6.03%
UGT
5.21%
BAHD
4.6%
7DLGT
4.51%
UFGT
4.45%
IFS
4.08%
CYP76
3.84%
Other Families
60.52%
More Families (98)
4CL
192
3.17%
T3O
191
3.16%
POD
168
2.78%
F3H
162
2.68%
BR6OX2/CYP85A2
143
2.36%
CAD
135
2.23%
DWF4/CYP90B1
132
2.18%
F3'H/CYP75B
121
2.0%
H6H
114
1.88%
CAS
100
1.65%
NMT
92
1.52%
LAC
87
1.44%
STR
82
1.36%
CYP71
81
1.34%
CODM/T6ODM
79
1.31%
TPS
77
1.27%
GES
71
1.17%
CYP90D1
71
1.17%
GS
70
1.16%
CSE
69
1.14%
SMT1/SMT2/SMT3
68
1.12%
TRI/TRII
65
1.07%
7DLH
60
0.99%
G8O/G8H
57
0.94%
SLS
56
0.93%
HCT
54
0.89%
TAT
48
0.79%
SGD
43
0.71%
ANR
42
0.69%
T16H
41
0.68%
F3'5'H/CYP75A
41
0.68%
COMT
40
0.66%
SQE
40
0.66%
IO
39
0.64%
PMT
38
0.63%
RAS
37
0.61%
IFR
35
0.58%
BBE
33
0.55%
LAMT
32
0.53%
F5H/CYP84A
31
0.51%
16OMT
27
0.45%
CCR
27
0.45%
COR
26
0.43%
NCS
25
0.41%
FNS
25
0.41%
PYKS
24
0.4%
8HGO
21
0.35%
BR6OX1/CYP85A1
21
0.35%
CCoAOMT
20
0.33%
DFR
18
0.3%
ROT3/CYP90C1
18
0.3%
CYP51G1
18
0.3%
CNMT
16
0.26%
GGPPS
16
0.26%
ANS/LDOX
14
0.23%
CPD/CYP90A1
14
0.23%
HPPR
13
0.21%
CYP719
11
0.18%
MPO
11
0.18%
CYP80B1
10
0.17%
ODC
10
0.17%
HMGR
10
0.17%
CHS
9
0.15%
PAL
9
0.15%
MVK
9
0.15%
ISY
8
0.13%
CPR
8
0.13%
DXS
8
0.13%
AACT
7
0.12%
DET2
6
0.1%
FPPS
6
0.1%
TYDC_DDC
5
0.08%
SQS/FDFT1
5
0.08%
6OMT_4OMT_SOMT
4
0.07%
FLS
4
0.07%
CHI
3
0.05%
SMO1/SMO2
3
0.05%
HDR/IspH
3
0.05%
DXR
3
0.05%
MVD
3
0.05%
MCT/IspD
3
0.05%
XMT_MXMT_DXMT
2
0.03%
CYP80F1
2
0.03%
DWF5
2
0.03%
HDS/IspG
2
0.03%
CMK/IspE
2
0.03%
GPPS
2
0.03%
ADC
1
0.02%
TDC
1
0.02%
FK
1
0.02%
HYD1
1
0.02%
DWF1
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 763 | 20 | UGT (301) | View species results |
| Alkaloid pathway | 553 | 25 | 7DLGT (133) | View species results |
| Phenylpropanoid pathway | 497 | 12 | POD (154) | View species results |
| Flavonoid pathway | 331 | 12 | UFGT (247) | View species results |
| Rosmarinic acid pathway | 221 | 7 | C4H (98) | View species results |
| Steroid pathway | 183 | 14 | CAS (86) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2411 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 369 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| ROchi06G0029530.1 | Alkaloid | GS | low | borderline |
| ROchi06G0029540.1 | Alkaloid | GS | low | borderline |
| ROchi06G0029560.1 | Alkaloid | GS | low | borderline |
| ROchi06G0029580.1 | Alkaloid | GS | low | borderline |
| ROchi06G0029590.1 | Alkaloid | GS | low | borderline |
| ROchi06G0029600.1 | Alkaloid | GS | low | borderline |
| ROchi06G0029610.1 | Alkaloid | GS | low | borderline |
| ROchi06G0029640.1 | Alkaloid | GS | low | borderline |
| ROchi06G0046570.1 | Alkaloid | GS | high | pass |
| ROchi07G0009560.1 | Alkaloid | GS | high | pass |
| ROchi07G0009570.1 | Alkaloid | GS | high | pass |
| ROchi00G0002330.1 | Alkaloid | H6H | medium | borderline |
| ROchi00G0010530.1 | Alkaloid | H6H | low | borderline |
| ROchi00G0010550.1 | Alkaloid | H6H | low | borderline |
| ROchi00G0019590.1 | Alkaloid | H6H | low | borderline |
| ROchi01G0014200.1 | Alkaloid | H6H | low | borderline |
| ROchi01G0016070.1 | Alkaloid | H6H | medium | borderline |
| ROchi01G0017210.1 | Alkaloid | H6H | medium | pass |
| ROchi01G0018840.1 | Alkaloid | H6H | low | borderline |
| ROchi01G0018850.1 | Alkaloid | H6H | low | borderline |
| ROchi01G0018860.1 | Alkaloid | H6H | low | borderline |
| ROchi01G0030060.1 | Alkaloid | H6H | low | borderline |
| ROchi01G0032620.1 | Alkaloid | H6H | low | borderline |
| ROchi01G0034730.1 | Alkaloid | H6H | medium | borderline |
| ROchi01G0042430.1 | Alkaloid | H6H | low | borderline |
| ROchi01G0052390.1 | Alkaloid | H6H | medium | borderline |
| ROchi02G0000730.1 | Alkaloid | H6H | low | borderline |
| ROchi02G0004560.1 | Alkaloid | H6H | low | borderline |
| ROchi02G0010090.1 | Alkaloid | H6H | low | borderline |
| ROchi02G0010430.1 | Alkaloid | H6H | low | borderline |
| ROchi02G0012770.1 | Alkaloid | H6H | high | pass |
| ROchi02G0018340.1 | Alkaloid | H6H | low | borderline |
| ROchi02G0019710.1 | Alkaloid | H6H | low | borderline |
| ROchi02G0040730.1 | Alkaloid | H6H | low | borderline |
| ROchi02G0040740.1 | Alkaloid | H6H | low | borderline |
| ROchi02G0040770.1 | Alkaloid | H6H | low | borderline |
| ROchi02G0043150.1 | Alkaloid | H6H | low | borderline |
| ROchi03G0006900.1 | Alkaloid | H6H | low | borderline |
| ROchi03G0022990.1 | Alkaloid | H6H | low | borderline |
| ROchi03G0023030.1 | Alkaloid | H6H | medium | borderline |
| ROchi03G0026960.1 | Alkaloid | H6H | low | borderline |
| ROchi04G0003200.1 | Alkaloid | H6H | low | borderline |
| ROchi04G0003330.1 | Alkaloid | H6H | medium | pass |
| ROchi04G0003340.1 | Alkaloid | H6H | low | borderline |
| ROchi04G0003360.1 | Alkaloid | H6H | medium | pass |
| ROchi04G0003370.1 | Alkaloid | H6H | medium | pass |
| ROchi04G0003410.1 | Alkaloid | H6H | low | borderline |
| ROchi04G0003490.1 | Alkaloid | H6H | medium | pass |
| ROchi04G0003500.1 | Alkaloid | H6H | low | borderline |
| ROchi04G0003530.1 | Alkaloid | H6H | low | borderline |