PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Rocc01G0010920.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc01G0028180.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc01G0030980.1 Steroid BR6OX1/CYP85A1 low borderline
Rocc02G0000830.1 Steroid BR6OX1/CYP85A1 low borderline
Rocc02G0008710.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc02G0023800.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc02G0026380.1 Steroid BR6OX1/CYP85A1 low borderline
Rocc02G0042700.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc03G0004600.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc03G0008150.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc03G0039290.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc04G0009290.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc04G0011170.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc04G0011740.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc05G0016570.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc05G0025390.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc05G0038220.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc07G0013360.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc07G0013610.1 Steroid BR6OX1/CYP85A1 medium borderline
Rocc07G0042090.1 Steroid BR6OX1/CYP85A1 low borderline
Rocc01G0003290.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc01G0007390.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc01G0026570.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc01G0031070.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc01G0031090.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc01G0036240.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc02G0000910.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc02G0001340.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc02G0007110.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc02G0017230.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc02G0020110.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc02G0020160.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc02G0021200.1 Steroid BR6OX2/CYP85A2 medium borderline
Rocc02G0033720.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc03G0004510.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc03G0005140.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc03G0006810.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc03G0009920.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc03G0013960.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc03G0014730.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc03G0024610.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc03G0034000.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc03G0034040.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc03G0039300.1 Steroid BR6OX2/CYP85A2 medium borderline
Rocc03G0041420.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0000530.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0006540.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0006770.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0006790.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0006810.1 Steroid BR6OX2/CYP85A2 low borderline