PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Rocc04G0010140.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0010150.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0011160.1 Steroid BR6OX2/CYP85A2 medium borderline
Rocc04G0011520.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0017490.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0020680.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0027530.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0027560.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0027570.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc04G0034470.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc05G0004470.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc05G0006810.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc05G0009820.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc05G0010360.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc05G0010410.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc05G0014090.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc05G0016500.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc05G0016510.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc05G0019740.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc05G0038760.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc05G0041190.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc06G0010530.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc06G0048140.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc06G0055600.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc06G0055640.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc07G0000480.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc07G0001570.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc07G0006830.1 Steroid BR6OX2/CYP85A2 medium borderline
Rocc07G0010820.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc07G0011070.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc07G0011080.1 Steroid BR6OX2/CYP85A2 medium borderline
Rocc07G0024200.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc07G0024580.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc07G0024770.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc07G0043400.1 Steroid BR6OX2/CYP85A2 low borderline
Rocc01G0016710.1 Steroid CAS low borderline
Rocc01G0025420.1 Steroid CAS medium pass
Rocc01G0027590.1 Steroid CAS medium pass
Rocc01G0034880.1 Steroid CAS medium pass
Rocc02G0016050.1 Steroid CAS medium pass
Rocc02G0029240.1 Steroid CAS medium pass
Rocc02G0038000.1 Steroid CAS medium pass
Rocc02G0038050.1 Steroid CAS medium pass
Rocc02G0038090.1 Steroid CAS medium pass
Rocc02G0038120.1 Steroid CAS medium pass
Rocc03G0012310.1 Steroid CAS medium pass
Rocc03G0012350.1 Steroid CAS medium pass
Rocc03G0013930.1 Steroid CAS medium pass
Rocc03G0029270.1 Steroid CAS low borderline
Rocc03G0029370.1 Steroid CAS low borderline