PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Rocc03G0029390.1 Steroid CAS medium pass
Rocc03G0029710.1 Steroid CAS low borderline
Rocc03G0029730.1 Steroid CAS low borderline
Rocc03G0029760.1 Steroid CAS low borderline
Rocc03G0036770.1 Steroid CAS medium pass
Rocc03G0046890.1 Steroid CAS low borderline
Rocc03G0046940.1 Steroid CAS medium pass
Rocc04G0007930.1 Steroid CAS low borderline
Rocc04G0019960.1 Steroid CAS medium pass
Rocc04G0021160.1 Steroid CAS medium pass
Rocc04G0028720.1 Steroid CAS medium pass
Rocc04G0028730.1 Steroid CAS medium pass
Rocc04G0034220.1 Steroid CAS medium pass
Rocc04G0034230.1 Steroid CAS medium pass
Rocc04G0034240.1 Steroid CAS medium pass
Rocc04G0043480.1 Steroid CAS medium pass
Rocc05G0005140.1 Steroid CAS medium pass
Rocc06G0020430.1 Steroid CAS medium pass
Rocc06G0020440.1 Steroid CAS low borderline
Rocc06G0020470.1 Steroid CAS medium pass
Rocc06G0020490.1 Steroid CAS medium pass
Rocc06G0020520.1 Steroid CAS medium pass
Rocc06G0020560.1 Steroid CAS medium pass
Rocc06G0020570.1 Steroid CAS medium pass
Rocc06G0020620.1 Steroid CAS medium pass
Rocc06G0026900.1 Steroid CAS low borderline
Rocc06G0026980.1 Steroid CAS medium pass
Rocc06G0034410.1 Steroid CAS medium pass
Rocc06G0034420.1 Steroid CAS medium pass
Rocc06G0034440.1 Steroid CAS medium pass
Rocc06G0034450.1 Steroid CAS medium pass
Rocc06G0048960.1 Steroid CAS medium pass
Rocc06G0049090.1 Steroid CAS low borderline
Rocc06G0049420.1 Steroid CAS medium pass
Rocc06G0049430.1 Steroid CAS medium pass
Rocc06G0049440.1 Steroid CAS medium pass
Rocc06G0049460.1 Steroid CAS low borderline
Rocc07G0004150.1 Steroid CAS medium pass
Rocc01G0015190.1 Steroid CPD/CYP90A1 low borderline
Rocc03G0003970.1 Steroid CPD/CYP90A1 low borderline
Rocc03G0004090.1 Steroid CPD/CYP90A1 medium borderline
Rocc03G0027290.1 Steroid CPD/CYP90A1 medium borderline
Rocc05G0016320.1 Steroid CPD/CYP90A1 low borderline
Rocc06G0003680.1 Steroid CPD/CYP90A1 low borderline
Rocc06G0046870.1 Steroid CPD/CYP90A1 low borderline
Rocc06G0056950.1 Steroid CPD/CYP90A1 medium borderline
Rocc07G0004560.1 Steroid CPD/CYP90A1 medium borderline
Rocc07G0004570.1 Steroid CPD/CYP90A1 medium borderline
Rocc07G0004580.1 Steroid CPD/CYP90A1 medium borderline
Rocc07G0004600.1 Steroid CPD/CYP90A1 medium borderline