PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1672
Candidate Protein Records
1347
Pathway-Level Records
3641
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
Rocc02G0020160.1 Alkaloid T3O medium pass
Rocc02G0029420.1 Alkaloid T3O medium borderline
Rocc02G0029950.1 Alkaloid T3O medium borderline
Rocc02G0036420.1 Alkaloid T3O medium borderline
Rocc02G0041000.1 Alkaloid T3O low borderline
Rocc03G0000730.1 Alkaloid T3O low borderline
Rocc03G0008150.1 Alkaloid T3O low borderline
Rocc03G0009920.1 Alkaloid T3O medium borderline
Rocc03G0012170.1 Alkaloid T3O medium borderline
Rocc03G0012190.1 Alkaloid T3O medium borderline
Rocc03G0012200.1 Alkaloid T3O medium borderline
Rocc03G0013330.1 Alkaloid T3O medium borderline
Rocc03G0013960.1 Alkaloid T3O medium borderline
Rocc03G0014730.1 Alkaloid T3O medium borderline
Rocc03G0024850.1 Alkaloid T3O medium borderline
Rocc03G0027290.1 Alkaloid T3O medium pass
Rocc03G0029340.1 Alkaloid T3O medium borderline
Rocc03G0029630.1 Alkaloid T3O medium borderline
Rocc03G0029670.1 Alkaloid T3O medium borderline
Rocc03G0029690.1 Alkaloid T3O medium borderline
Rocc03G0029770.1 Alkaloid T3O medium borderline
Rocc03G0039290.1 Alkaloid T3O medium pass
Rocc03G0039300.1 Alkaloid T3O medium pass
Rocc03G0041280.1 Alkaloid T3O low borderline
Rocc03G0041940.1 Alkaloid T3O low borderline
Rocc04G0000530.1 Alkaloid T3O low borderline
Rocc04G0005480.1 Alkaloid T3O low borderline
Rocc04G0006780.1 Alkaloid T3O low borderline
Rocc04G0007920.1 Alkaloid T3O medium borderline
Rocc04G0009290.1 Alkaloid T3O medium pass
Rocc04G0010140.1 Alkaloid T3O medium borderline
Rocc04G0010150.1 Alkaloid T3O high pass
Rocc04G0010190.1 Alkaloid T3O low borderline
Rocc04G0010660.1 Alkaloid T3O medium borderline
Rocc04G0010760.1 Alkaloid T3O medium borderline
Rocc04G0011160.1 Alkaloid T3O low borderline
Rocc04G0011240.1 Alkaloid T3O medium borderline
Rocc04G0011740.1 Alkaloid T3O medium borderline
Rocc04G0020680.1 Alkaloid T3O medium borderline
Rocc04G0028690.1 Alkaloid T3O medium pass
Rocc05G0000360.1 Alkaloid T3O medium pass
Rocc05G0002740.1 Alkaloid T3O medium pass
Rocc05G0004160.1 Alkaloid T3O medium borderline
Rocc05G0004470.1 Alkaloid T3O medium borderline
Rocc05G0009090.1 Alkaloid T3O medium borderline
Rocc05G0009510.1 Alkaloid T3O medium borderline
Rocc05G0009530.1 Alkaloid T3O medium borderline
Rocc05G0009820.1 Alkaloid T3O medium borderline
Rocc05G0009830.1 Alkaloid T3O medium borderline
Rocc05G0009850.1 Alkaloid T3O medium borderline