PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1672
Candidate Protein Records
1347
Pathway-Level Records
3641
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rocc05G0010160.1 Alkaloid T3O medium borderline
Rocc05G0010170.1 Alkaloid T3O medium borderline
Rocc05G0010260.1 Alkaloid T3O medium borderline
Rocc05G0010380.1 Alkaloid T3O medium borderline
Rocc05G0010400.1 Alkaloid T3O medium borderline
Rocc05G0010410.1 Alkaloid T3O medium borderline
Rocc05G0015170.1 Alkaloid T3O medium pass
Rocc05G0016570.1 Alkaloid T3O medium borderline
Rocc05G0017380.1 Alkaloid T3O medium borderline
Rocc05G0017400.1 Alkaloid T3O medium borderline
Rocc05G0019260.1 Alkaloid T3O medium borderline
Rocc05G0020390.1 Alkaloid T3O medium pass
Rocc05G0023190.1 Alkaloid T3O medium borderline
Rocc05G0038200.1 Alkaloid T3O medium pass
Rocc05G0038210.1 Alkaloid T3O low borderline
Rocc05G0039200.1 Alkaloid T3O medium borderline
Rocc05G0039230.1 Alkaloid T3O medium borderline
Rocc05G0039820.1 Alkaloid T3O medium borderline
Rocc06G0002710.1 Alkaloid T3O medium pass
Rocc06G0003680.1 Alkaloid T3O low borderline
Rocc06G0003790.1 Alkaloid T3O medium borderline
Rocc06G0007150.1 Alkaloid T3O medium pass
Rocc06G0017080.1 Alkaloid T3O medium pass
Rocc06G0022070.1 Alkaloid T3O medium pass
Rocc06G0024060.1 Alkaloid T3O medium pass
Rocc06G0029210.1 Alkaloid T3O medium pass
Rocc06G0031410.1 Alkaloid T3O medium borderline
Rocc06G0031600.1 Alkaloid T3O medium borderline
Rocc06G0031830.1 Alkaloid T3O medium pass
Rocc06G0048140.1 Alkaloid T3O medium pass
Rocc06G0055600.1 Alkaloid T3O medium borderline
Rocc06G0055640.1 Alkaloid T3O medium borderline
Rocc06G0058470.1 Alkaloid T3O medium borderline
Rocc07G0005980.1 Alkaloid T3O medium borderline
Rocc07G0011070.1 Alkaloid T3O medium borderline
Rocc07G0011080.1 Alkaloid T3O medium borderline
Rocc07G0011190.1 Alkaloid T3O medium borderline
Rocc07G0013300.1 Alkaloid T3O medium pass
Rocc07G0013850.1 Alkaloid T3O medium borderline
Rocc07G0014380.1 Alkaloid T3O medium borderline
Rocc07G0016710.1 Alkaloid T3O medium borderline
Rocc07G0016730.1 Alkaloid T3O medium borderline
Rocc07G0036250.1 Alkaloid T3O low borderline
Rocc07G0037680.1 Alkaloid T3O medium pass
Rocc02G0027010.1 Alkaloid TDC low borderline
Rocc01G0019490.1 Alkaloid TRI/TRII low borderline
Rocc01G0027890.1 Alkaloid TRI/TRII medium pass
Rocc01G0028410.1 Alkaloid TRI/TRII low borderline
Rocc02G0014600.1 Alkaloid TRI/TRII medium pass
Rocc02G0014760.1 Alkaloid TRI/TRII medium pass