PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Rocc03G0006320.1 Alkaloid BBE low borderline
Rocc03G0039540.1 Alkaloid BBE medium borderline
Rocc03G0039550.1 Alkaloid BBE medium borderline
Rocc03G0039580.1 Alkaloid BBE medium borderline
Rocc03G0039610.1 Alkaloid BBE low borderline
Rocc03G0039620.1 Alkaloid BBE medium borderline
Rocc03G0039640.1 Alkaloid BBE medium borderline
Rocc03G0039830.1 Alkaloid BBE low borderline
Rocc03G0039840.1 Alkaloid BBE medium borderline
Rocc03G0039850.1 Alkaloid BBE low borderline
Rocc03G0039870.1 Alkaloid BBE medium borderline
Rocc03G0039900.1 Alkaloid BBE low borderline
Rocc03G0039940.1 Alkaloid BBE medium borderline
Rocc03G0039950.1 Alkaloid BBE medium borderline
Rocc03G0039960.1 Alkaloid BBE medium borderline
Rocc06G0052190.1 Alkaloid BBE low borderline
Rocc07G0041760.1 Alkaloid BBE low borderline
Rocc01G0026950.1 Alkaloid CNMT low borderline
Rocc02G0008930.1 Alkaloid CNMT medium borderline
Rocc02G0040090.1 Alkaloid CNMT low borderline
Rocc04G0005440.1 Alkaloid CNMT low borderline
Rocc04G0025690.1 Alkaloid CNMT medium pass
Rocc04G0032670.1 Alkaloid CNMT low borderline
Rocc05G0007990.1 Alkaloid CNMT low borderline
Rocc06G0028640.1 Alkaloid CNMT low borderline
Rocc07G0012770.1 Alkaloid CNMT low borderline
Rocc01G0001970.1 Alkaloid CODM/T6ODM medium borderline
Rocc01G0005900.1 Alkaloid CODM/T6ODM medium borderline
Rocc01G0006460.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0010200.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0012990.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0017580.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0025280.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0025290.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0028650.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0031040.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0032500.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0032590.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0032640.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0032740.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0041490.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0045160.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0045250.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0047610.1 Alkaloid CODM/T6ODM medium borderline
Rocc03G0000580.1 Alkaloid CODM/T6ODM medium borderline
Rocc03G0006270.1 Alkaloid CODM/T6ODM medium borderline
Rocc03G0028040.1 Alkaloid CODM/T6ODM medium borderline
Rocc03G0033810.1 Alkaloid CODM/T6ODM medium borderline
Rocc03G0035620.1 Alkaloid CODM/T6ODM medium borderline
Rocc03G0041700.1 Alkaloid CODM/T6ODM medium borderline