PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Family-Level Assignments
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Rocc03G0042600.1 Alkaloid CODM/T6ODM medium borderline
Rocc03G0042610.1 Alkaloid CODM/T6ODM medium borderline
Rocc03G0047270.1 Alkaloid CODM/T6ODM medium borderline
Rocc04G0000940.1 Alkaloid CODM/T6ODM medium borderline
Rocc04G0003060.1 Alkaloid CODM/T6ODM medium borderline
Rocc04G0009920.1 Alkaloid CODM/T6ODM medium borderline
Rocc04G0014520.1 Alkaloid CODM/T6ODM medium borderline
Rocc04G0017120.1 Alkaloid CODM/T6ODM medium borderline
Rocc04G0031280.1 Alkaloid CODM/T6ODM medium borderline
Rocc04G0031310.1 Alkaloid CODM/T6ODM medium borderline
Rocc04G0031320.1 Alkaloid CODM/T6ODM medium borderline
Rocc04G0031350.1 Alkaloid CODM/T6ODM medium borderline
Rocc05G0015640.1 Alkaloid CODM/T6ODM medium borderline
Rocc05G0018380.1 Alkaloid CODM/T6ODM medium borderline
Rocc05G0018980.1 Alkaloid CODM/T6ODM medium borderline
Rocc05G0018990.1 Alkaloid CODM/T6ODM medium borderline
Rocc06G0009800.1 Alkaloid CODM/T6ODM medium borderline
Rocc06G0013500.1 Alkaloid CODM/T6ODM medium borderline
Rocc06G0023120.1 Alkaloid CODM/T6ODM medium borderline
Rocc06G0025580.1 Alkaloid CODM/T6ODM medium borderline
Rocc06G0041200.1 Alkaloid CODM/T6ODM medium borderline
Rocc06G0042840.1 Alkaloid CODM/T6ODM medium borderline
Rocc06G0042850.1 Alkaloid CODM/T6ODM medium borderline
Rocc06G0042860.1 Alkaloid CODM/T6ODM medium borderline
Rocc06G0042880.1 Alkaloid CODM/T6ODM medium borderline
Rocc06G0042910.1 Alkaloid CODM/T6ODM medium borderline
Rocc06G0042920.1 Alkaloid CODM/T6ODM low borderline
Rocc06G0049120.1 Alkaloid CODM/T6ODM medium borderline
Rocc07G0006520.1 Alkaloid CODM/T6ODM medium borderline
Rocc07G0009250.1 Alkaloid CODM/T6ODM medium borderline
Rocc07G0027630.1 Alkaloid CODM/T6ODM medium borderline
Rocc07G0036520.1 Alkaloid CODM/T6ODM medium borderline
Rocc07G0038580.1 Alkaloid CODM/T6ODM medium borderline
Rocc07G0043200.1 Alkaloid CODM/T6ODM medium borderline
Rocc02G0035870.1 Alkaloid COR medium pass
Rocc04G0001070.1 Alkaloid COR medium pass
Rocc04G0001500.1 Alkaloid COR medium pass
Rocc04G0001510.1 Alkaloid COR medium pass
Rocc04G0009850.1 Alkaloid COR medium pass
Rocc04G0009890.1 Alkaloid COR medium pass
Rocc04G0009900.1 Alkaloid COR medium pass
Rocc06G0042510.1 Alkaloid COR low borderline
Rocc06G0042520.1 Alkaloid COR medium pass
Rocc06G0042540.1 Alkaloid COR low borderline
Rocc07G0039120.1 Alkaloid COR medium pass
Rocc01G0025880.1 Alkaloid CYP719 medium borderline
Rocc02G0006360.1 Alkaloid CYP719 medium borderline
Rocc02G0020110.1 Alkaloid CYP719 medium borderline
Rocc02G0023700.1 Alkaloid CYP719 medium borderline
Rocc02G0023740.1 Alkaloid CYP719 medium borderline