PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1672
Candidate Protein Records
1347
Pathway-Level Records
3641
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rocc07G0004550.1 Alkaloid CYP719 medium borderline
Rocc07G0004580.1 Alkaloid CYP719 medium borderline
Rocc07G0004610.1 Alkaloid CYP719 medium borderline
Rocc02G0000880.1 Alkaloid CYP80B1 medium borderline
Rocc02G0023800.1 Alkaloid CYP80B1 medium borderline
Rocc03G0005120.1 Alkaloid CYP80B1 medium borderline
Rocc03G0005140.1 Alkaloid CYP80B1 medium borderline
Rocc03G0024840.1 Alkaloid CYP80B1 low borderline
Rocc03G0036080.1 Alkaloid CYP80B1 low borderline
Rocc04G0006540.1 Alkaloid CYP80B1 medium borderline
Rocc05G0010360.1 Alkaloid CYP80B1 medium borderline
Rocc07G0004250.1 Alkaloid CYP80B1 medium borderline
Rocc07G0010820.1 Alkaloid CYP80B1 medium borderline
Rocc01G0015660.1 Alkaloid CYP80F1 low borderline
Rocc04G0011490.1 Alkaloid CYP80F1 low borderline
Rocc05G0025390.1 Alkaloid CYP80F1 medium borderline
Rocc05G0040310.1 Alkaloid CYP80F1 medium borderline
Rocc01G0034800.1 Alkaloid G8O/G8H medium borderline
Rocc02G0000910.1 Alkaloid G8O/G8H medium borderline
Rocc02G0007040.1 Alkaloid G8O/G8H medium borderline
Rocc02G0027030.1 Alkaloid G8O/G8H medium borderline
Rocc02G0029610.1 Alkaloid G8O/G8H medium borderline
Rocc03G0013980.1 Alkaloid G8O/G8H medium borderline
Rocc03G0024660.1 Alkaloid G8O/G8H medium borderline
Rocc03G0027490.1 Alkaloid G8O/G8H medium borderline
Rocc03G0033830.1 Alkaloid G8O/G8H medium borderline
Rocc04G0011210.1 Alkaloid G8O/G8H medium borderline
Rocc04G0011220.1 Alkaloid G8O/G8H medium borderline
Rocc05G0003160.1 Alkaloid G8O/G8H low borderline
Rocc05G0009840.1 Alkaloid G8O/G8H low borderline
Rocc05G0010190.1 Alkaloid G8O/G8H medium borderline
Rocc05G0010200.1 Alkaloid G8O/G8H medium borderline
Rocc05G0015720.1 Alkaloid G8O/G8H medium borderline
Rocc05G0016500.1 Alkaloid G8O/G8H medium borderline
Rocc05G0016510.1 Alkaloid G8O/G8H medium borderline
Rocc05G0016540.1 Alkaloid G8O/G8H medium borderline
Rocc05G0016560.1 Alkaloid G8O/G8H medium borderline
Rocc05G0017390.1 Alkaloid G8O/G8H medium borderline
Rocc05G0017410.1 Alkaloid G8O/G8H medium borderline
Rocc05G0039210.1 Alkaloid G8O/G8H medium pass
Rocc06G0010530.1 Alkaloid G8O/G8H medium borderline
Rocc06G0018800.1 Alkaloid G8O/G8H medium borderline
Rocc07G0011200.1 Alkaloid G8O/G8H medium borderline
Rocc07G0042090.1 Alkaloid G8O/G8H medium borderline
Rocc07G0042110.1 Alkaloid G8O/G8H medium borderline
Rocc01G0016710.1 Alkaloid GES medium pass
Rocc01G0027590.1 Alkaloid GES medium pass
Rocc01G0027840.1 Alkaloid GES medium pass
Rocc01G0027860.1 Alkaloid GES medium pass
Rocc02G0016050.1 Alkaloid GES low borderline