PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1672
Candidate Protein Records
1347
Pathway-Level Records
3641
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rocc02G0046250.1 Flavonoid F3H medium borderline
Rocc02G0047610.1 Flavonoid F3H medium borderline
Rocc03G0000580.1 Flavonoid F3H medium borderline
Rocc03G0006270.1 Flavonoid F3H low borderline
Rocc03G0009770.1 Flavonoid F3H low borderline
Rocc03G0012500.1 Flavonoid F3H medium pass
Rocc03G0022860.1 Flavonoid F3H low borderline
Rocc03G0028040.1 Flavonoid F3H medium borderline
Rocc03G0033810.1 Flavonoid F3H medium borderline
Rocc03G0034430.1 Flavonoid F3H medium pass
Rocc03G0035620.1 Flavonoid F3H medium borderline
Rocc03G0042600.1 Flavonoid F3H medium borderline
Rocc03G0042610.1 Flavonoid F3H medium borderline
Rocc03G0047270.1 Flavonoid F3H medium borderline
Rocc03G0048840.1 Flavonoid F3H medium borderline
Rocc03G0049440.1 Flavonoid F3H low borderline
Rocc04G0000940.1 Flavonoid F3H medium borderline
Rocc04G0003060.1 Flavonoid F3H medium borderline
Rocc04G0009920.1 Flavonoid F3H medium borderline
Rocc04G0014520.1 Flavonoid F3H medium pass
Rocc04G0017120.1 Flavonoid F3H medium borderline
Rocc04G0022950.1 Flavonoid F3H low borderline
Rocc04G0026960.1 Flavonoid F3H medium borderline
Rocc04G0029830.1 Flavonoid F3H low borderline
Rocc04G0029840.1 Flavonoid F3H medium borderline
Rocc04G0031280.1 Flavonoid F3H low borderline
Rocc04G0031310.1 Flavonoid F3H medium borderline
Rocc04G0031320.1 Flavonoid F3H medium borderline
Rocc04G0031350.1 Flavonoid F3H low borderline
Rocc04G0042840.1 Flavonoid F3H medium borderline
Rocc05G0007170.1 Flavonoid F3H medium borderline
Rocc05G0015640.1 Flavonoid F3H medium borderline
Rocc05G0018380.1 Flavonoid F3H medium borderline
Rocc05G0018980.1 Flavonoid F3H medium borderline
Rocc05G0018990.1 Flavonoid F3H medium borderline
Rocc05G0019970.1 Flavonoid F3H low borderline
Rocc05G0020200.1 Flavonoid F3H medium borderline
Rocc05G0044300.1 Flavonoid F3H medium borderline
Rocc05G0044320.1 Flavonoid F3H medium borderline
Rocc06G0009800.1 Flavonoid F3H medium borderline
Rocc06G0013480.1 Flavonoid F3H low borderline
Rocc06G0013500.1 Flavonoid F3H medium borderline
Rocc06G0025580.1 Flavonoid F3H medium borderline
Rocc06G0041200.1 Flavonoid F3H medium borderline
Rocc06G0042060.1 Flavonoid F3H low borderline
Rocc06G0042840.1 Flavonoid F3H medium borderline
Rocc06G0042850.1 Flavonoid F3H medium borderline
Rocc06G0042880.1 Flavonoid F3H medium borderline
Rocc06G0042890.1 Flavonoid F3H medium borderline
Rocc06G0046880.1 Flavonoid F3H medium borderline