PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1672
Candidate Protein Records
1347
Pathway-Level Records
3641
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rocc07G0001020.1 Flavonoid F3H medium borderline
Rocc07G0004690.1 Flavonoid F3H low borderline
Rocc07G0006510.1 Flavonoid F3H medium pass
Rocc07G0006520.1 Flavonoid F3H medium borderline
Rocc07G0009250.1 Flavonoid F3H medium borderline
Rocc07G0015590.1 Flavonoid F3H low borderline
Rocc07G0015650.1 Flavonoid F3H low borderline
Rocc07G0015660.1 Flavonoid F3H low borderline
Rocc07G0016900.1 Flavonoid F3H medium borderline
Rocc07G0036520.1 Flavonoid F3H medium borderline
Rocc07G0038580.1 Flavonoid F3H medium borderline
Rocc07G0043200.1 Flavonoid F3H medium borderline
Rocc07G0044560.1 Flavonoid F3H medium borderline
Rocc02G0017740.1 Flavonoid FLS medium borderline
Rocc03G0012640.1 Flavonoid FLS low borderline
Rocc07G0027490.1 Flavonoid FLS medium borderline
Rocc01G0006500.1 Flavonoid FNS low borderline
Rocc01G0031070.1 Flavonoid FNS medium borderline
Rocc02G0000880.1 Flavonoid FNS medium pass
Rocc02G0007040.1 Flavonoid FNS medium borderline
Rocc02G0023970.1 Flavonoid FNS medium borderline
Rocc02G0029810.1 Flavonoid FNS medium borderline
Rocc02G0045560.1 Flavonoid FNS medium borderline
Rocc02G0045580.1 Flavonoid FNS medium borderline
Rocc03G0013980.1 Flavonoid FNS medium borderline
Rocc03G0014030.1 Flavonoid FNS medium borderline
Rocc03G0024270.1 Flavonoid FNS medium borderline
Rocc04G0012820.1 Flavonoid FNS medium borderline
Rocc05G0006810.1 Flavonoid FNS medium borderline
Rocc05G0010360.1 Flavonoid FNS medium borderline
Rocc06G0029210.1 Flavonoid FNS medium borderline
Rocc07G0000520.1 Flavonoid FNS medium borderline
Rocc07G0011200.1 Flavonoid FNS low borderline
Rocc02G0000010.1 Flavonoid IFR low borderline
Rocc02G0001790.1 Flavonoid IFR high pass
Rocc02G0013720.1 Flavonoid IFR low borderline
Rocc02G0018950.1 Flavonoid IFR low borderline
Rocc02G0023860.1 Flavonoid IFR medium pass
Rocc02G0038560.1 Flavonoid IFR high pass
Rocc02G0038570.1 Flavonoid IFR medium pass
Rocc02G0038580.1 Flavonoid IFR high pass
Rocc02G0040010.1 Flavonoid IFR low borderline
Rocc03G0009370.1 Flavonoid IFR low borderline
Rocc03G0015770.1 Flavonoid IFR medium pass
Rocc03G0017250.1 Flavonoid IFR low borderline
Rocc03G0041970.1 Flavonoid IFR low borderline
Rocc03G0043190.1 Flavonoid IFR low borderline
Rocc04G0007740.1 Flavonoid IFR high pass
Rocc04G0017470.1 Flavonoid IFR medium pass
Rocc04G0043110.1 Flavonoid IFR low borderline