Syntrichia ruralis (syntrichia_ruralis)
Imported from atlas release summary for Syntrichia ruralis.
1661
Candidate Protein Records
1236
Pathway-Level Records
3266
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3266
Family-Level Calls
C4H
7.35%
C3'H/CYP98A
6.77%
CYP76
5.36%
BAHD
4.75%
POD
4.44%
4CL
4.41%
NMT
3.83%
PAL
3.4%
Other Families
59.71%
More Families (97)
IFS
95
2.91%
F3'H/CYP75B
90
2.76%
BR6OX2/CYP85A2
88
2.69%
DWF4/CYP90B1
88
2.69%
STR
74
2.27%
T3O
71
2.17%
IFR
66
2.02%
UGT
64
1.96%
GS
61
1.87%
7DLGT
61
1.87%
UFGT
61
1.87%
IO
55
1.68%
F3H
49
1.5%
PYKS
46
1.41%
G8O/G8H
45
1.38%
CYP71
39
1.19%
F3'5'H/CYP75A
37
1.13%
CAD
35
1.07%
CODM/T6ODM
33
1.01%
CAS
32
0.98%
SMT1/SMT2/SMT3
31
0.95%
TRI/TRII
30
0.92%
CHS
30
0.92%
COMT
29
0.89%
LAC
27
0.83%
T16H
26
0.8%
FNS
26
0.8%
SLS
23
0.7%
7DLH
23
0.7%
H6H
22
0.67%
CYP80B1
20
0.61%
ANR
20
0.61%
CSE
17
0.52%
HCT
17
0.52%
SGD
16
0.49%
CYP90D1
16
0.49%
SQS/FDFT1
15
0.46%
CPD/CYP90A1
15
0.46%
AACT
15
0.46%
RAS
14
0.43%
PMT
13
0.4%
COR
13
0.4%
BBE
13
0.4%
F5H/CYP84A
13
0.4%
BR6OX1/CYP85A1
13
0.4%
NCS
12
0.37%
8HGO
11
0.34%
16OMT
11
0.34%
CCoAOMT
11
0.34%
DET2
11
0.34%
TDC
10
0.31%
LAMT
10
0.31%
DXS
10
0.31%
TAT
9
0.28%
SQE
8
0.24%
DXR
8
0.24%
CNMT
7
0.21%
ANS/LDOX
7
0.21%
CCR
7
0.21%
CPR
7
0.21%
IDI
7
0.21%
GGPPS
7
0.21%
MVK
6
0.18%
MCT/IspD
6
0.18%
TYDC_DDC
5
0.15%
CHI
5
0.15%
DFR
5
0.15%
MPO
4
0.12%
ADC
4
0.12%
CYP719
4
0.12%
ROT3/CYP90C1
4
0.12%
DWF5
4
0.12%
MVD
4
0.12%
HDS/IspG
4
0.12%
MDS/IspF
4
0.12%
TPS
4
0.12%
CMK/IspE
4
0.12%
HDR/IspH
4
0.12%
6OMT_4OMT_SOMT
3
0.09%
ISY
3
0.09%
HPPR
3
0.09%
CPI1
3
0.09%
HYD1
3
0.09%
SMO1/SMO2
3
0.09%
FPPS
3
0.09%
XMT_MXMT_DXMT
2
0.06%
FLS
2
0.06%
DWF1
2
0.06%
DWF7
2
0.06%
HMGR
2
0.06%
PMK
2
0.06%
CYP80F1
1
0.03%
GES
1
0.03%
CYP51G1
1
0.03%
FK
1
0.03%
HMGS
1
0.03%
GPPS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 319 | 20 | BAHD (105) | View species results |
| Phenylpropanoid pathway | 317 | 11 | POD (139) | View species results |
| Alkaloid pathway | 245 | 17 | NMT (47) | View species results |
| Flavonoid pathway | 160 | 11 | UFGT (55) | View species results |
| Rosmarinic acid pathway | 124 | 7 | C4H (42) | View species results |
| Steroid pathway | 71 | 12 | CAS (28) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1403 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 186 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Srurcontig_8430430140 | Alkaloid | STR | low | borderline |
| Srurcontig_8480431490 | Alkaloid | STR | low | borderline |
| Srurcontig_850434800 | Alkaloid | STR | medium | pass |
| Srurcontig_850434850 | Alkaloid | STR | medium | pass |
| Srurcontig_850436040 | Alkaloid | STR | low | borderline |
| Srurcontig_8870453000 | Alkaloid | STR | medium | pass |
| Srurcontig_9150470700 | Alkaloid | STR | low | borderline |
| Srurcontig_9150470770 | Alkaloid | STR | low | borderline |
| Srurcontig_9160474070 | Alkaloid | STR | medium | pass |
| Srurcontig_9160474080 | Alkaloid | STR | low | borderline |
| Srurcontig_9270475510 | Alkaloid | STR | low | borderline |
| Srurcontig_9410481820 | Alkaloid | STR | low | borderline |
| Srurcontig_9480483070 | Alkaloid | STR | low | borderline |
| Srurcontig_9960502120 | Alkaloid | STR | low | borderline |
| Srurcontig_10090008190 | Alkaloid | T16H | medium | borderline |
| Srurcontig_10370017830 | Alkaloid | T16H | medium | borderline |
| Srurcontig_10490021960 | Alkaloid | T16H | medium | borderline |
| Srurcontig_1400071700 | Alkaloid | T16H | medium | borderline |
| Srurcontig_2030102970 | Alkaloid | T16H | medium | borderline |
| Srurcontig_2140108440 | Alkaloid | T16H | low | borderline |
| Srurcontig_2400118440 | Alkaloid | T16H | medium | borderline |
| Srurcontig_2680128990 | Alkaloid | T16H | medium | borderline |
| Srurcontig_3170151650 | Alkaloid | T16H | medium | borderline |
| Srurcontig_3350163710 | Alkaloid | T16H | medium | borderline |
| Srurcontig_3670178350 | Alkaloid | T16H | medium | pass |
| Srurcontig_370180030 | Alkaloid | T16H | medium | borderline |
| Srurcontig_390189750 | Alkaloid | T16H | medium | borderline |
| Srurcontig_3910196880 | Alkaloid | T16H | medium | borderline |
| Srurcontig_4070201800 | Alkaloid | T16H | medium | pass |
| Srurcontig_4490223400 | Alkaloid | T16H | medium | borderline |
| Srurcontig_4810239700 | Alkaloid | T16H | medium | borderline |
| Srurcontig_4810239710 | Alkaloid | T16H | medium | borderline |
| Srurcontig_490242270 | Alkaloid | T16H | medium | borderline |
| Srurcontig_510251800 | Alkaloid | T16H | low | borderline |
| Srurcontig_5450275410 | Alkaloid | T16H | medium | borderline |
| Srurcontig_5930300800 | Alkaloid | T16H | medium | borderline |
| Srurcontig_780396850 | Alkaloid | T16H | medium | borderline |
| Srurcontig_7920405860 | Alkaloid | T16H | medium | borderline |
| Srurcontig_7920405900 | Alkaloid | T16H | medium | borderline |
| Srurcontig_9300478310 | Alkaloid | T16H | medium | borderline |
| Srurcontig_10030002960 | Alkaloid | T3O | medium | borderline |
| Srurcontig_10030002970 | Alkaloid | T3O | medium | borderline |
| Srurcontig_10320017110 | Alkaloid | T3O | medium | pass |
| Srurcontig_10320017140 | Alkaloid | T3O | low | borderline |
| Srurcontig_10490021860 | Alkaloid | T3O | medium | borderline |
| Srurcontig_10560023030 | Alkaloid | T3O | medium | borderline |
| Srurcontig_11180058180 | Alkaloid | T3O | low | borderline |
| Srurcontig_11180058330 | Alkaloid | T3O | medium | pass |
| Srurcontig_1990098580 | Alkaloid | T3O | medium | pass |
| Srurcontig_2210110680 | Alkaloid | T3O | medium | borderline |