Syntrichia ruralis (syntrichia_ruralis)
Imported from atlas release summary for Syntrichia ruralis.
1236
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1236
Candidate Genes
C4H
7.35%
C3'H/CYP98A
6.77%
CYP76
5.36%
BAHD
4.75%
POD
4.44%
4CL
4.41%
NMT
3.83%
PAL
3.4%
Other Families
59.71%
More Families (97)
IFS
95
2.91%
F3'H/CYP75B
90
2.76%
BR6OX2/CYP85A2
88
2.69%
DWF4/CYP90B1
88
2.69%
STR
74
2.27%
T3O
71
2.17%
IFR
66
2.02%
UGT
64
1.96%
GS
61
1.87%
7DLGT
61
1.87%
UFGT
61
1.87%
IO
55
1.68%
F3H
49
1.5%
PYKS
46
1.41%
G8O/G8H
45
1.38%
CYP71
39
1.19%
F3'5'H/CYP75A
37
1.13%
CAD
35
1.07%
CODM/T6ODM
33
1.01%
CAS
32
0.98%
SMT1/SMT2/SMT3
31
0.95%
TRI/TRII
30
0.92%
CHS
30
0.92%
COMT
29
0.89%
LAC
27
0.83%
T16H
26
0.8%
FNS
26
0.8%
SLS
23
0.7%
7DLH
23
0.7%
H6H
22
0.67%
CYP80B1
20
0.61%
ANR
20
0.61%
CSE
17
0.52%
HCT
17
0.52%
SGD
16
0.49%
CYP90D1
16
0.49%
SQS/FDFT1
15
0.46%
CPD/CYP90A1
15
0.46%
AACT
15
0.46%
RAS
14
0.43%
PMT
13
0.4%
COR
13
0.4%
BBE
13
0.4%
F5H/CYP84A
13
0.4%
BR6OX1/CYP85A1
13
0.4%
NCS
12
0.37%
8HGO
11
0.34%
16OMT
11
0.34%
CCoAOMT
11
0.34%
DET2
11
0.34%
TDC
10
0.31%
LAMT
10
0.31%
DXS
10
0.31%
TAT
9
0.28%
SQE
8
0.24%
DXR
8
0.24%
CNMT
7
0.21%
ANS/LDOX
7
0.21%
CCR
7
0.21%
CPR
7
0.21%
IDI
7
0.21%
GGPPS
7
0.21%
MVK
6
0.18%
MCT/IspD
6
0.18%
TYDC_DDC
5
0.15%
CHI
5
0.15%
DFR
5
0.15%
MPO
4
0.12%
ADC
4
0.12%
CYP719
4
0.12%
ROT3/CYP90C1
4
0.12%
DWF5
4
0.12%
MVD
4
0.12%
HDS/IspG
4
0.12%
MDS/IspF
4
0.12%
TPS
4
0.12%
CMK/IspE
4
0.12%
HDR/IspH
4
0.12%
6OMT_4OMT_SOMT
3
0.09%
ISY
3
0.09%
HPPR
3
0.09%
CPI1
3
0.09%
HYD1
3
0.09%
SMO1/SMO2
3
0.09%
FPPS
3
0.09%
XMT_MXMT_DXMT
2
0.06%
FLS
2
0.06%
DWF1
2
0.06%
DWF7
2
0.06%
HMGR
2
0.06%
PMK
2
0.06%
CYP80F1
1
0.03%
GES
1
0.03%
CYP51G1
1
0.03%
FK
1
0.03%
HMGS
1
0.03%
GPPS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 319 | 20 | BAHD (105) | View species results |
| Phenylpropanoid pathway | 317 | 11 | POD (139) | View species results |
| Alkaloid pathway | 245 | 17 | NMT (47) | View species results |
| Flavonoid pathway | 160 | 11 | UFGT (55) | View species results |
| Rosmarinic acid pathway | 124 | 7 | C4H (42) | View species results |
| Steroid pathway | 71 | 12 | CAS (28) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1403 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 186 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Srurcontig_10070005630 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_10080006330 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_10080006870 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_10960043370 | Alkaloid | SLS | low | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_11180058790 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_2030103380 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_2520123500 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_340165420 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_4150206140 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_4320211610 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_5040247790 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_5240258390 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_5240258440 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_5240258460 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_5670291090 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_6310322380 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_6330325120 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_7550371540 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Srurcontig_7580382290 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_7830398830 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_9130467910 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Srurcontig_9160472140 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Srurcontig_9980504410 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |