PlantSME Plant secondary metabolism enzyme database

Syntrichia ruralis (syntrichia_ruralis)

Imported from atlas release summary for Syntrichia ruralis.

1236
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.81% Phenylpropanoid pathway 25.65% Alkaloid pathway 19.82% Flavonoid pathway 12.94% Rosmarinic acid pathway 10.03% Steroid pathway 5.74%
Family Distribution
C4H 7.35% C3'H/CYP98A 6.77% CYP76 5.36% BAHD 4.75% POD 4.44% 4CL 4.41% NMT 3.83% PAL 3.4%
Other Families 59.71%
More Families (97)
IFS 95 2.91% F3'H/CYP75B 90 2.76% BR6OX2/CYP85A2 88 2.69% DWF4/CYP90B1 88 2.69% STR 74 2.27% T3O 71 2.17% IFR 66 2.02% UGT 64 1.96% GS 61 1.87% 7DLGT 61 1.87% UFGT 61 1.87% IO 55 1.68% F3H 49 1.5% PYKS 46 1.41% G8O/G8H 45 1.38% CYP71 39 1.19% F3'5'H/CYP75A 37 1.13% CAD 35 1.07% CODM/T6ODM 33 1.01% CAS 32 0.98% SMT1/SMT2/SMT3 31 0.95% TRI/TRII 30 0.92% CHS 30 0.92% COMT 29 0.89% LAC 27 0.83% T16H 26 0.8% FNS 26 0.8% SLS 23 0.7% 7DLH 23 0.7% H6H 22 0.67% CYP80B1 20 0.61% ANR 20 0.61% CSE 17 0.52% HCT 17 0.52% SGD 16 0.49% CYP90D1 16 0.49% SQS/FDFT1 15 0.46% CPD/CYP90A1 15 0.46% AACT 15 0.46% RAS 14 0.43% PMT 13 0.4% COR 13 0.4% BBE 13 0.4% F5H/CYP84A 13 0.4% BR6OX1/CYP85A1 13 0.4% NCS 12 0.37% 8HGO 11 0.34% 16OMT 11 0.34% CCoAOMT 11 0.34% DET2 11 0.34% TDC 10 0.31% LAMT 10 0.31% DXS 10 0.31% TAT 9 0.28% SQE 8 0.24% DXR 8 0.24% CNMT 7 0.21% ANS/LDOX 7 0.21% CCR 7 0.21% CPR 7 0.21% IDI 7 0.21% GGPPS 7 0.21% MVK 6 0.18% MCT/IspD 6 0.18% TYDC_DDC 5 0.15% CHI 5 0.15% DFR 5 0.15% MPO 4 0.12% ADC 4 0.12% CYP719 4 0.12% ROT3/CYP90C1 4 0.12% DWF5 4 0.12% MVD 4 0.12% HDS/IspG 4 0.12% MDS/IspF 4 0.12% TPS 4 0.12% CMK/IspE 4 0.12% HDR/IspH 4 0.12% 6OMT_4OMT_SOMT 3 0.09% ISY 3 0.09% HPPR 3 0.09% CPI1 3 0.09% HYD1 3 0.09% SMO1/SMO2 3 0.09% FPPS 3 0.09% XMT_MXMT_DXMT 2 0.06% FLS 2 0.06% DWF1 2 0.06% DWF7 2 0.06% HMGR 2 0.06% PMK 2 0.06% CYP80F1 1 0.03% GES 1 0.03% CYP51G1 1 0.03% FK 1 0.03% HMGS 1 0.03% GPPS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 319 20 BAHD (105) View species results
Phenylpropanoid pathway 317 11 POD (139) View species results
Alkaloid pathway 245 17 NMT (47) View species results
Flavonoid pathway 160 11 UFGT (55) View species results
Rosmarinic acid pathway 124 7 C4H (42) View species results
Steroid pathway 71 12 CAS (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1403 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 186 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DET2
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Gene Pathway Family Confidence Status Best Target
Srurcontig_10070005160 Steroid DET2 low borderline DET2__00001__sp_I1HTF7_DET2_BRADI
Srurcontig_10440020100 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
Srurcontig_11180055940 Steroid DET2 medium pass DET2__00003__sp_Q38944_DET2_ARATH
Srurcontig_2060105600 Steroid DET2 low borderline DET2__00003__sp_Q38944_DET2_ARATH
Srurcontig_3900193220 Steroid DET2 low borderline DET2__00001__sp_I1HTF7_DET2_BRADI
Srurcontig_4180206840 Steroid DET2 low borderline DET2__00003__sp_Q38944_DET2_ARATH
Srurcontig_4790239240 Steroid DET2 low borderline DET2__00003__sp_Q38944_DET2_ARATH
Srurcontig_6540336140 Steroid DET2 low borderline DET2__00004__sp_Q5K2N1_DET2_SOLLC
Srurcontig_7580384830 Steroid DET2 medium pass DET2__00003__sp_Q38944_DET2_ARATH
Srurcontig_7620391110 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
Srurcontig_9000459830 Steroid DET2 low borderline DET2__00004__sp_Q5K2N1_DET2_SOLLC