PlantSME Plant secondary metabolism enzyme database

Syntrichia ruralis (syntrichia_ruralis)

Imported from atlas release summary for Syntrichia ruralis.

1661
Candidate Protein Records
1236
Pathway-Level Records
3266
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 319 20 BAHD (105) View species results
Phenylpropanoid pathway 317 11 POD (139) View species results
Alkaloid pathway 245 17 NMT (47) View species results
Flavonoid pathway 160 11 UFGT (55) View species results
Rosmarinic acid pathway 124 7 C4H (42) View species results
Steroid pathway 71 12 CAS (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1403 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 186 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Srurcontig_10030003310 Terpenoid GGPPS medium borderline
Srurcontig_3120150100 Terpenoid GGPPS medium borderline
Srurcontig_5330262570 Terpenoid GGPPS medium borderline
Srurcontig_5540283570 Terpenoid GGPPS medium borderline
Srurcontig_8140418380 Terpenoid GGPPS medium borderline
Srurcontig_8510437060 Terpenoid GGPPS medium borderline
Srurcontig_9010460360 Terpenoid GGPPS medium borderline
Srurcontig_9010460350 Terpenoid GPPS low borderline
Srurcontig_4470220430 Terpenoid HDR/IspH high pass
Srurcontig_4920243230 Terpenoid HDR/IspH high pass
Srurcontig_5990302500 Terpenoid HDR/IspH high pass
Srurcontig_7850399620 Terpenoid HDR/IspH high pass
Srurcontig_10610024310 Terpenoid HDS/IspG high pass
Srurcontig_6290317530 Terpenoid HDS/IspG high pass
Srurcontig_8070413530 Terpenoid HDS/IspG high pass
Srurcontig_860444210 Terpenoid HDS/IspG high pass
Srurcontig_5360266460 Terpenoid HMGR medium pass
Srurcontig_710354270 Terpenoid HMGR medium pass
Srurcontig_6530335730 Terpenoid HMGS high pass
Srurcontig_10000001060 Terpenoid IDI low borderline
Srurcontig_4390217460 Terpenoid IDI low borderline
Srurcontig_5370267040 Terpenoid IDI medium pass
Srurcontig_5370267080 Terpenoid IDI medium pass
Srurcontig_7550370940 Terpenoid IDI medium pass
Srurcontig_7550370950 Terpenoid IDI medium pass
Srurcontig_7550370960 Terpenoid IDI medium pass
Srurcontig_11150052670 Terpenoid MCT/IspD low borderline
Srurcontig_3910196580 Terpenoid MCT/IspD high pass
Srurcontig_4280210100 Terpenoid MCT/IspD low borderline
Srurcontig_4680235260 Terpenoid MCT/IspD high pass
Srurcontig_540269940 Terpenoid MCT/IspD high pass
Srurcontig_8010411220 Terpenoid MCT/IspD high pass
Srurcontig_1290068140 Terpenoid MDS/IspF high pass
Srurcontig_4360214860 Terpenoid MDS/IspF low borderline
Srurcontig_6150308950 Terpenoid MDS/IspF high pass
Srurcontig_930477910 Terpenoid MDS/IspF low borderline
Srurcontig_10490021570 Terpenoid MVD medium pass
Srurcontig_4340213880 Terpenoid MVD low borderline
Srurcontig_4340213920 Terpenoid MVD low borderline
Srurcontig_9760493580 Terpenoid MVD low borderline
Srurcontig_10170011400 Terpenoid MVK low borderline
Srurcontig_10230014330 Terpenoid MVK low borderline
Srurcontig_1770085050 Terpenoid MVK low borderline
Srurcontig_1960094820 Terpenoid MVK low borderline
Srurcontig_3910193700 Terpenoid MVK medium pass
Srurcontig_9930501500 Terpenoid MVK low borderline
Srurcontig_8140418410 Terpenoid PMK medium pass
Srurcontig_8510437100 Terpenoid PMK medium pass
Srurcontig_1870089640 Terpenoid TPS low borderline
Srurcontig_4070202630 Terpenoid TPS low borderline