PlantSME Plant secondary metabolism enzyme database

Arabis alpina (arabis_alpina)

Imported from atlas release summary for Arabis alpina.

1406
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 426 19 BAHD (197) View species results
Alkaloid pathway 322 18 SGD (62) View species results
Phenylpropanoid pathway 264 11 POD (121) View species results
Flavonoid pathway 175 9 UFGT (116) View species results
Rosmarinic acid pathway 113 7 C4H (48) View species results
Steroid pathway 106 13 SMT1/SMT2/SMT3 (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1300 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 285 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Aalp07G0038700 Rosmarinic Acid C4H low borderline
Aalp08G0002630 Rosmarinic Acid C4H medium pass
Aalp08G0004410 Rosmarinic Acid C4H low borderline
Aalp08G0004750 Rosmarinic Acid C4H low borderline
Aalp08G0005410 Rosmarinic Acid C4H low borderline
Aalp08G0005580 Rosmarinic Acid C4H low borderline
Aalp08G0005610 Rosmarinic Acid C4H low borderline
Aalp08G0006040 Rosmarinic Acid C4H low borderline
Aalp08G0007680 Rosmarinic Acid C4H low borderline
Aalp08G0009070 Rosmarinic Acid C4H low borderline
Aalp08G0011050 Rosmarinic Acid C4H medium pass
Aalp08G0011990 Rosmarinic Acid C4H low borderline
Aalp08G0012820 Rosmarinic Acid C4H low borderline
Aalp08G0016850 Rosmarinic Acid C4H low borderline
Aalp08G0016860 Rosmarinic Acid C4H low borderline
Aalp08G0016870 Rosmarinic Acid C4H low borderline
Aalp08G0040000 Rosmarinic Acid C4H low borderline
Aalp08G0040040 Rosmarinic Acid C4H low borderline
Aalp08G0047950 Rosmarinic Acid C4H low borderline
Aalp08G0048710 Rosmarinic Acid C4H medium pass
Aalp08G0048730 Rosmarinic Acid C4H medium pass
Aalp08G0048750 Rosmarinic Acid C4H low borderline
Aalp08G0048760 Rosmarinic Acid C4H low borderline
Aalp08G0049020 Rosmarinic Acid C4H low borderline
Aalp08G0049030 Rosmarinic Acid C4H low borderline
Aalp08G0056210 Rosmarinic Acid C4H low borderline
Aalp08G0057770 Rosmarinic Acid C4H medium pass
Aalp08G0057780 Rosmarinic Acid C4H low borderline
Aalp08G0057790 Rosmarinic Acid C4H medium pass
Aalp08G0057810 Rosmarinic Acid C4H medium pass
Aalp08G0057820 Rosmarinic Acid C4H medium pass
Aalpscaffold_2550005510 Rosmarinic Acid C4H low borderline
Aalpscaffold_3020006400 Rosmarinic Acid C4H low borderline
Aalpscaffold_930012300 Rosmarinic Acid C4H low borderline
Aalp03G0001180 Rosmarinic Acid CPR medium pass
Aalp03G0001250 Rosmarinic Acid CPR medium pass
Aalp03G0001320 Rosmarinic Acid CPR medium pass
Aalp03G0001370 Rosmarinic Acid CPR medium pass
Aalp03G0001380 Rosmarinic Acid CPR low borderline
Aalp03G0001410 Rosmarinic Acid CPR medium pass
Aalp03G0001450 Rosmarinic Acid CPR medium pass
Aalp04G0042290 Rosmarinic Acid CPR low borderline
Aalp05G0018000 Rosmarinic Acid CPR medium pass
Aalp07G0014610 Rosmarinic Acid CPR medium pass
Aalp08G0059240 Rosmarinic Acid CPR low borderline
Aalp01G0016280 Rosmarinic Acid HPPR medium pass
Aalp01G0016300 Rosmarinic Acid HPPR medium pass
Aalp01G0016310 Rosmarinic Acid HPPR medium pass
Aalp01G0016340 Rosmarinic Acid HPPR medium pass
Aalp02G0030710 Rosmarinic Acid HPPR medium pass