Aulacomnium turgidum (aulacomnium_turgidum)
Imported from atlas release summary for Aulacomnium turgidum.
973
Candidate Protein Records
700
Pathway-Level Records
1843
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1843
Family-Level Calls
C4H
6.84%
C3'H/CYP98A
5.97%
POD
5.64%
BAHD
5.48%
NMT
5.37%
CYP76
4.94%
4CL
4.23%
IFS
3.09%
Other Families
58.44%
More Families (96)
PAL
54
2.93%
BR6OX2/CYP85A2
47
2.55%
T3O
45
2.44%
GS
40
2.17%
STR
40
2.17%
F3H
39
2.12%
DWF4/CYP90B1
39
2.12%
IFR
38
2.06%
F3'H/CYP75B
35
1.9%
PYKS
33
1.79%
CAD
26
1.41%
UGT
26
1.41%
7DLGT
24
1.3%
CHS
24
1.3%
CODM/T6ODM
23
1.25%
SMT1/SMT2/SMT3
23
1.25%
UFGT
22
1.19%
IO
21
1.14%
F3'5'H/CYP75A
20
1.09%
H6H
19
1.03%
TRI/TRII
19
1.03%
COMT
17
0.92%
CYP71
17
0.92%
G8O/G8H
16
0.87%
T16H
16
0.87%
CYP90D1
14
0.76%
HCT
13
0.71%
CAS
13
0.71%
FNS
12
0.65%
LAC
11
0.6%
RAS
11
0.6%
SLS
10
0.54%
SGD
10
0.54%
7DLH
10
0.54%
CNMT
9
0.49%
MPO
9
0.49%
ANR
9
0.49%
CSE
9
0.49%
NCS
8
0.43%
CCR
8
0.43%
CPD/CYP90A1
8
0.43%
BBE
7
0.38%
LAMT
7
0.38%
8HGO
7
0.38%
COR
7
0.38%
CYP80B1
7
0.38%
F5H/CYP84A
7
0.38%
TAT
7
0.38%
SQS/FDFT1
7
0.38%
BR6OX1/CYP85A1
7
0.38%
TDC
6
0.33%
PMT
6
0.33%
DFR
6
0.33%
CPR
6
0.33%
AACT
6
0.33%
16OMT
5
0.27%
CYP80F1
5
0.27%
ROT3/CYP90C1
5
0.27%
CHI
4
0.22%
DWF5
4
0.22%
GGPPS
4
0.22%
CYP719
3
0.16%
ANS/LDOX
3
0.16%
FLS
3
0.16%
CYP51G1
3
0.16%
SQE
3
0.16%
DET2
3
0.16%
IDI
3
0.16%
MVD
3
0.16%
FPPS
3
0.16%
MVK
3
0.16%
TYDC_DDC
2
0.11%
ADC
2
0.11%
ISY
2
0.11%
GES
2
0.11%
CCoAOMT
2
0.11%
SMO1/SMO2
2
0.11%
HYD1
2
0.11%
CPI1
2
0.11%
MDS/IspF
2
0.11%
HDR/IspH
2
0.11%
DXR
2
0.11%
HDS/IspG
2
0.11%
HMGR
2
0.11%
DXS
2
0.11%
TPS
2
0.11%
6OMT_4OMT_SOMT
1
0.05%
HPPR
1
0.05%
FK
1
0.05%
DWF1
1
0.05%
DWF7
1
0.05%
CMK/IspE
1
0.05%
MCT/IspD
1
0.05%
PMK
1
0.05%
HMGS
1
0.05%
GPPS
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 183 | 11 | POD (96) | View species results |
| Terpenoid pathway | 156 | 19 | BAHD (65) | View species results |
| Alkaloid pathway | 155 | 18 | NMT (35) | View species results |
| Flavonoid pathway | 90 | 9 | CHS (22) | View species results |
| Rosmarinic acid pathway | 80 | 7 | C4H (35) | View species results |
| Steroid pathway | 36 | 13 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 719 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 125 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Aturscaffold_80294650 | Rosmarinic Acid | C4H | medium | pass |
| Aturscaffold_80296920 | Rosmarinic Acid | C4H | low | borderline |
| Aturscaffold_80306520 | Rosmarinic Acid | C4H | low | borderline |
| Aturscaffold_80312350 | Rosmarinic Acid | C4H | low | borderline |
| Aturscaffold_90312700 | Rosmarinic Acid | C4H | low | borderline |
| Aturscaffold_90317060 | Rosmarinic Acid | C4H | low | borderline |
| Aturscaffold_90321160 | Rosmarinic Acid | C4H | low | borderline |
| Aturscaffold_90321180 | Rosmarinic Acid | C4H | low | borderline |
| Aturscaffold_90322170 | Rosmarinic Acid | C4H | medium | pass |
| Aturscaffold_90322180 | Rosmarinic Acid | C4H | medium | pass |
| Aturscaffold_90322190 | Rosmarinic Acid | C4H | medium | pass |
| Aturscaffold_90322210 | Rosmarinic Acid | C4H | medium | pass |
| Aturscaffold_90323480 | Rosmarinic Acid | C4H | low | borderline |
| Aturscaffold_90323670 | Rosmarinic Acid | C4H | low | borderline |
| Aturscaffold_90329440 | Rosmarinic Acid | C4H | low | borderline |
| Aturscaffold_90330490 | Rosmarinic Acid | C4H | low | borderline |
| Aturscaffold_90333320 | Rosmarinic Acid | C4H | low | borderline |