PlantSME Plant secondary metabolism enzyme database

Aulacomnium turgidum (aulacomnium_turgidum)

Imported from atlas release summary for Aulacomnium turgidum.

700
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.14% Terpenoid pathway 22.29% Alkaloid pathway 22.14% Flavonoid pathway 12.86% Rosmarinic acid pathway 11.43% Steroid pathway 5.14%
Family Distribution
C4H 6.84% C3'H/CYP98A 5.97% POD 5.64% BAHD 5.48% NMT 5.37% CYP76 4.94% 4CL 4.23% IFS 3.09%
Other Families 58.44%
More Families (96)
PAL 54 2.93% BR6OX2/CYP85A2 47 2.55% T3O 45 2.44% GS 40 2.17% STR 40 2.17% F3H 39 2.12% DWF4/CYP90B1 39 2.12% IFR 38 2.06% F3'H/CYP75B 35 1.9% PYKS 33 1.79% CAD 26 1.41% UGT 26 1.41% 7DLGT 24 1.3% CHS 24 1.3% CODM/T6ODM 23 1.25% SMT1/SMT2/SMT3 23 1.25% UFGT 22 1.19% IO 21 1.14% F3'5'H/CYP75A 20 1.09% H6H 19 1.03% TRI/TRII 19 1.03% COMT 17 0.92% CYP71 17 0.92% G8O/G8H 16 0.87% T16H 16 0.87% CYP90D1 14 0.76% HCT 13 0.71% CAS 13 0.71% FNS 12 0.65% LAC 11 0.6% RAS 11 0.6% SLS 10 0.54% SGD 10 0.54% 7DLH 10 0.54% CNMT 9 0.49% MPO 9 0.49% ANR 9 0.49% CSE 9 0.49% NCS 8 0.43% CCR 8 0.43% CPD/CYP90A1 8 0.43% BBE 7 0.38% LAMT 7 0.38% 8HGO 7 0.38% COR 7 0.38% CYP80B1 7 0.38% F5H/CYP84A 7 0.38% TAT 7 0.38% SQS/FDFT1 7 0.38% BR6OX1/CYP85A1 7 0.38% TDC 6 0.33% PMT 6 0.33% DFR 6 0.33% CPR 6 0.33% AACT 6 0.33% 16OMT 5 0.27% CYP80F1 5 0.27% ROT3/CYP90C1 5 0.27% CHI 4 0.22% DWF5 4 0.22% GGPPS 4 0.22% CYP719 3 0.16% ANS/LDOX 3 0.16% FLS 3 0.16% CYP51G1 3 0.16% SQE 3 0.16% DET2 3 0.16% IDI 3 0.16% MVD 3 0.16% FPPS 3 0.16% MVK 3 0.16% TYDC_DDC 2 0.11% ADC 2 0.11% ISY 2 0.11% GES 2 0.11% CCoAOMT 2 0.11% SMO1/SMO2 2 0.11% HYD1 2 0.11% CPI1 2 0.11% MDS/IspF 2 0.11% HDR/IspH 2 0.11% DXR 2 0.11% HDS/IspG 2 0.11% HMGR 2 0.11% DXS 2 0.11% TPS 2 0.11% 6OMT_4OMT_SOMT 1 0.05% HPPR 1 0.05% FK 1 0.05% DWF1 1 0.05% DWF7 1 0.05% CMK/IspE 1 0.05% MCT/IspD 1 0.05% PMK 1 0.05% HMGS 1 0.05% GPPS 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 183 11 POD (96) View species results
Terpenoid pathway 156 19 BAHD (65) View species results
Alkaloid pathway 155 18 NMT (35) View species results
Flavonoid pathway 90 9 CHS (22) View species results
Rosmarinic acid pathway 80 7 C4H (35) View species results
Steroid pathway 36 13 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 719 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 125 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
Aturscaffold_100039050 Phenylpropanoid CCR low borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Aturscaffold_20095330 Phenylpropanoid CCR low borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Aturscaffold_60213120 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Aturscaffold_80276590 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Aturscaffold_80284900 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Aturscaffold_80294080 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Aturscaffold_90327650 Phenylpropanoid CCR medium pass CCR__00001__sp_A0A059TC02_CCR1_PETHY
Aturscaffold_90332560 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ