PlantSME Plant secondary metabolism enzyme database

Aulacomnium turgidum (aulacomnium_turgidum)

Imported from atlas release summary for Aulacomnium turgidum.

973
Candidate Protein Records
700
Pathway-Level Records
1843
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 26.14% Terpenoid pathway 22.29% Alkaloid pathway 22.14% Flavonoid pathway 12.86% Rosmarinic acid pathway 11.43% Steroid pathway 5.14%
Family Distribution
C4H 6.84% C3'H/CYP98A 5.97% POD 5.64% BAHD 5.48% NMT 5.37% CYP76 4.94% 4CL 4.23% IFS 3.09%
Other Families 58.44%
More Families (96)
PAL 54 2.93% BR6OX2/CYP85A2 47 2.55% T3O 45 2.44% GS 40 2.17% STR 40 2.17% F3H 39 2.12% DWF4/CYP90B1 39 2.12% IFR 38 2.06% F3'H/CYP75B 35 1.9% PYKS 33 1.79% CAD 26 1.41% UGT 26 1.41% 7DLGT 24 1.3% CHS 24 1.3% CODM/T6ODM 23 1.25% SMT1/SMT2/SMT3 23 1.25% UFGT 22 1.19% IO 21 1.14% F3'5'H/CYP75A 20 1.09% H6H 19 1.03% TRI/TRII 19 1.03% COMT 17 0.92% CYP71 17 0.92% G8O/G8H 16 0.87% T16H 16 0.87% CYP90D1 14 0.76% HCT 13 0.71% CAS 13 0.71% FNS 12 0.65% LAC 11 0.6% RAS 11 0.6% SLS 10 0.54% SGD 10 0.54% 7DLH 10 0.54% CNMT 9 0.49% MPO 9 0.49% ANR 9 0.49% CSE 9 0.49% NCS 8 0.43% CCR 8 0.43% CPD/CYP90A1 8 0.43% BBE 7 0.38% LAMT 7 0.38% 8HGO 7 0.38% COR 7 0.38% CYP80B1 7 0.38% F5H/CYP84A 7 0.38% TAT 7 0.38% SQS/FDFT1 7 0.38% BR6OX1/CYP85A1 7 0.38% TDC 6 0.33% PMT 6 0.33% DFR 6 0.33% CPR 6 0.33% AACT 6 0.33% 16OMT 5 0.27% CYP80F1 5 0.27% ROT3/CYP90C1 5 0.27% CHI 4 0.22% DWF5 4 0.22% GGPPS 4 0.22% CYP719 3 0.16% ANS/LDOX 3 0.16% FLS 3 0.16% CYP51G1 3 0.16% SQE 3 0.16% DET2 3 0.16% IDI 3 0.16% MVD 3 0.16% FPPS 3 0.16% MVK 3 0.16% TYDC_DDC 2 0.11% ADC 2 0.11% ISY 2 0.11% GES 2 0.11% CCoAOMT 2 0.11% SMO1/SMO2 2 0.11% HYD1 2 0.11% CPI1 2 0.11% MDS/IspF 2 0.11% HDR/IspH 2 0.11% DXR 2 0.11% HDS/IspG 2 0.11% HMGR 2 0.11% DXS 2 0.11% TPS 2 0.11% 6OMT_4OMT_SOMT 1 0.05% HPPR 1 0.05% FK 1 0.05% DWF1 1 0.05% DWF7 1 0.05% CMK/IspE 1 0.05% MCT/IspD 1 0.05% PMK 1 0.05% HMGS 1 0.05% GPPS 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 183 11 POD (96) View species results
Terpenoid pathway 156 19 BAHD (65) View species results
Alkaloid pathway 155 18 NMT (35) View species results
Flavonoid pathway 90 9 CHS (22) View species results
Rosmarinic acid pathway 80 7 C4H (35) View species results
Steroid pathway 36 13 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 719 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 125 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status
Aturscaffold_10003470 Alkaloid 7DLGT medium pass
Aturscaffold_10004330 Alkaloid 7DLGT low borderline
Aturscaffold_100045820 Alkaloid 7DLGT low borderline
Aturscaffold_10010910 Alkaloid 7DLGT medium pass
Aturscaffold_10017900 Alkaloid 7DLGT low borderline
Aturscaffold_20099970 Alkaloid 7DLGT low borderline
Aturscaffold_30107180 Alkaloid 7DLGT medium pass
Aturscaffold_30109600 Alkaloid 7DLGT high pass
Aturscaffold_30109610 Alkaloid 7DLGT high pass
Aturscaffold_30117800 Alkaloid 7DLGT high pass
Aturscaffold_40154450 Alkaloid 7DLGT low borderline
Aturscaffold_70225430 Alkaloid 7DLGT low borderline
Aturscaffold_70242810 Alkaloid 7DLGT medium pass
Aturscaffold_70255280 Alkaloid 7DLGT high pass
Aturscaffold_70255300 Alkaloid 7DLGT medium pass
Aturscaffold_70255310 Alkaloid 7DLGT medium pass
Aturscaffold_70255910 Alkaloid 7DLGT medium pass
Aturscaffold_70259790 Alkaloid 7DLGT low borderline
Aturscaffold_70260360 Alkaloid 7DLGT medium pass
Aturscaffold_80290860 Alkaloid 7DLGT medium pass
Aturscaffold_80291490 Alkaloid 7DLGT low borderline
Aturscaffold_80300930 Alkaloid 7DLGT low borderline
Aturscaffold_80306550 Alkaloid 7DLGT low borderline
Aturscaffold_90325040 Alkaloid 7DLGT low borderline