Aulacomnium turgidum (aulacomnium_turgidum)
Imported from atlas release summary for Aulacomnium turgidum.
700
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
700
Candidate Genes
C4H
6.84%
C3'H/CYP98A
5.97%
POD
5.64%
BAHD
5.48%
NMT
5.37%
CYP76
4.94%
4CL
4.23%
IFS
3.09%
Other Families
58.44%
More Families (96)
PAL
54
2.93%
BR6OX2/CYP85A2
47
2.55%
T3O
45
2.44%
GS
40
2.17%
STR
40
2.17%
F3H
39
2.12%
DWF4/CYP90B1
39
2.12%
IFR
38
2.06%
F3'H/CYP75B
35
1.9%
PYKS
33
1.79%
CAD
26
1.41%
UGT
26
1.41%
7DLGT
24
1.3%
CHS
24
1.3%
CODM/T6ODM
23
1.25%
SMT1/SMT2/SMT3
23
1.25%
UFGT
22
1.19%
IO
21
1.14%
F3'5'H/CYP75A
20
1.09%
H6H
19
1.03%
TRI/TRII
19
1.03%
COMT
17
0.92%
CYP71
17
0.92%
G8O/G8H
16
0.87%
T16H
16
0.87%
CYP90D1
14
0.76%
HCT
13
0.71%
CAS
13
0.71%
FNS
12
0.65%
LAC
11
0.6%
RAS
11
0.6%
SLS
10
0.54%
SGD
10
0.54%
7DLH
10
0.54%
CNMT
9
0.49%
MPO
9
0.49%
ANR
9
0.49%
CSE
9
0.49%
NCS
8
0.43%
CCR
8
0.43%
CPD/CYP90A1
8
0.43%
BBE
7
0.38%
LAMT
7
0.38%
8HGO
7
0.38%
COR
7
0.38%
CYP80B1
7
0.38%
F5H/CYP84A
7
0.38%
TAT
7
0.38%
SQS/FDFT1
7
0.38%
BR6OX1/CYP85A1
7
0.38%
TDC
6
0.33%
PMT
6
0.33%
DFR
6
0.33%
CPR
6
0.33%
AACT
6
0.33%
16OMT
5
0.27%
CYP80F1
5
0.27%
ROT3/CYP90C1
5
0.27%
CHI
4
0.22%
DWF5
4
0.22%
GGPPS
4
0.22%
CYP719
3
0.16%
ANS/LDOX
3
0.16%
FLS
3
0.16%
CYP51G1
3
0.16%
SQE
3
0.16%
DET2
3
0.16%
IDI
3
0.16%
MVD
3
0.16%
FPPS
3
0.16%
MVK
3
0.16%
TYDC_DDC
2
0.11%
ADC
2
0.11%
ISY
2
0.11%
GES
2
0.11%
CCoAOMT
2
0.11%
SMO1/SMO2
2
0.11%
HYD1
2
0.11%
CPI1
2
0.11%
MDS/IspF
2
0.11%
HDR/IspH
2
0.11%
DXR
2
0.11%
HDS/IspG
2
0.11%
HMGR
2
0.11%
DXS
2
0.11%
TPS
2
0.11%
6OMT_4OMT_SOMT
1
0.05%
HPPR
1
0.05%
FK
1
0.05%
DWF1
1
0.05%
DWF7
1
0.05%
CMK/IspE
1
0.05%
MCT/IspD
1
0.05%
PMK
1
0.05%
HMGS
1
0.05%
GPPS
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 183 | 11 | POD (96) | View species results |
| Terpenoid pathway | 156 | 19 | BAHD (65) | View species results |
| Alkaloid pathway | 155 | 18 | NMT (35) | View species results |
| Flavonoid pathway | 90 | 9 | CHS (22) | View species results |
| Rosmarinic acid pathway | 80 | 7 | C4H (35) | View species results |
| Steroid pathway | 36 | 13 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 719 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 125 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Aturscaffold_100047410 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Aturscaffold_10009170 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Aturscaffold_10021200 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Aturscaffold_10023490 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Aturscaffold_30110630 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Aturscaffold_40171830 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Aturscaffold_50177030 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Aturscaffold_50180080 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Aturscaffold_50191560 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Aturscaffold_60198900 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Aturscaffold_60198920 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Aturscaffold_60202060 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Aturscaffold_70233070 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Aturscaffold_80273190 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Aturscaffold_80297870 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Aturscaffold_80297890 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Aturscaffold_80302420 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Aturscaffold_80311890 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Aturscaffold_80311940 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |