PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Bra003007.1-P Alkaloid 16OMT medium borderline
Bra003009.1-P Alkaloid 16OMT medium borderline
Bra003680.1-P Alkaloid 16OMT medium borderline
Bra003681.1-P Alkaloid 16OMT medium borderline
Bra003682.1-P Alkaloid 16OMT medium borderline
Bra008313.1-P Alkaloid 16OMT medium borderline
Bra008316.1-P Alkaloid 16OMT medium borderline
Bra010226.1-P Alkaloid 16OMT medium borderline
Bra011292.1-P Alkaloid 16OMT medium borderline
Bra012268.1-P Alkaloid 16OMT medium borderline
Bra012269.1-P Alkaloid 16OMT medium borderline
Bra015664.1-P Alkaloid 16OMT medium borderline
Bra015719.1-P Alkaloid 16OMT medium borderline
Bra016432.1-P Alkaloid 16OMT medium borderline
Bra016433.1-P Alkaloid 16OMT medium borderline
Bra017699.1-P Alkaloid 16OMT medium borderline
Bra017700.1-P Alkaloid 16OMT medium borderline
Bra019031.1-P Alkaloid 16OMT medium borderline
Bra022700.1-P Alkaloid 16OMT medium borderline
Bra025874.1-P Alkaloid 16OMT medium borderline
Bra025875.1-P Alkaloid 16OMT medium borderline
Bra026320.1-P Alkaloid 16OMT medium borderline
Bra027815.1-P Alkaloid 16OMT medium borderline
Bra029041.1-P Alkaloid 16OMT medium borderline
Bra034677.1-P Alkaloid 16OMT medium borderline
Bra035481.1-P Alkaloid 16OMT medium borderline
Bra035482.1-P Alkaloid 16OMT medium borderline
Bra038396.1-P Alkaloid 16OMT medium borderline
Bra034678.1-P Alkaloid 6OMT_4OMT_SOMT medium borderline
Bra000329.1-P Alkaloid 7DLGT low borderline
Bra000330.1-P Alkaloid 7DLGT low borderline
Bra000471.1-P Alkaloid 7DLGT low borderline
Bra000542.1-P Alkaloid 7DLGT medium pass
Bra000942.1-P Alkaloid 7DLGT high pass
Bra001505.1-P Alkaloid 7DLGT low borderline
Bra001845.1-P Alkaloid 7DLGT low borderline
Bra001846.1-P Alkaloid 7DLGT low borderline
Bra001847.1-P Alkaloid 7DLGT low borderline
Bra002002.1-P Alkaloid 7DLGT low borderline
Bra002556.1-P Alkaloid 7DLGT high pass
Bra003220.1-P Alkaloid 7DLGT high pass
Bra003824.1-P Alkaloid 7DLGT low borderline
Bra004787.1-P Alkaloid 7DLGT low borderline
Bra004788.1-P Alkaloid 7DLGT medium pass
Bra005227.1-P Alkaloid 7DLGT low borderline
Bra005229.1-P Alkaloid 7DLGT low borderline
Bra005241.1-P Alkaloid 7DLGT medium pass
Bra005242.1-P Alkaloid 7DLGT low borderline
Bra005243.1-P Alkaloid 7DLGT low borderline
Bra005245.1-P Alkaloid 7DLGT medium pass