PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
Bra001741.1-P Steroid CYP90D1 medium borderline
Bra004921.1-P Steroid CYP90D1 low borderline
Bra005863.1-P Steroid CYP90D1 medium borderline
Bra007988.1-P Steroid CYP90D1 low borderline
Bra009820.1-P Steroid CYP90D1 low borderline
Bra009868.1-P Steroid CYP90D1 low borderline
Bra010214.1-P Steroid CYP90D1 low borderline
Bra012551.1-P Steroid CYP90D1 medium borderline
Bra013130.1-P Steroid CYP90D1 low borderline
Bra013386.1-P Steroid CYP90D1 medium borderline
Bra013449.1-P Steroid CYP90D1 low borderline
Bra014953.1-P Steroid CYP90D1 low borderline
Bra016499.1-P Steroid CYP90D1 medium borderline
Bra020467.1-P Steroid CYP90D1 low borderline
Bra021482.1-P Steroid CYP90D1 low borderline
Bra021505.1-P Steroid CYP90D1 medium borderline
Bra022407.1-P Steroid CYP90D1 medium borderline
Bra023809.1-P Steroid CYP90D1 low borderline
Bra025191.1-P Steroid CYP90D1 low borderline
Bra025280.1-P Steroid CYP90D1 low borderline
Bra025281.1-P Steroid CYP90D1 low borderline
Bra027405.1-P Steroid CYP90D1 medium borderline
Bra027602.1-P Steroid CYP90D1 medium borderline
Bra028714.1-P Steroid CYP90D1 low borderline
Bra028715.1-P Steroid CYP90D1 low borderline
Bra028751.1-P Steroid CYP90D1 medium borderline
Bra032183.1-P Steroid CYP90D1 medium borderline
Bra032184.1-P Steroid CYP90D1 medium borderline
Bra034941.1-P Steroid CYP90D1 low borderline
Bra035812.1-P Steroid CYP90D1 low borderline
Bra038092.1-P Steroid CYP90D1 medium borderline
Bra038167.1-P Steroid CYP90D1 low borderline
Bra039188.1-P Steroid CYP90D1 low borderline
Bra039239.1-P Steroid CYP90D1 low borderline