PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status Best Target
Bra000211.1-P Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra000558.1-P Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO
Bra000572.1-P Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
Bra000768.1-P Terpenoid CYP76 medium pass CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF
Bra000769.1-P Terpenoid CYP76 medium pass CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF
Bra000845.1-P Terpenoid CYP76 medium pass CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Bra001078.1-P Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra001329.1-P Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra001330.1-P Terpenoid CYP76 medium pass CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Bra001774.1-P Terpenoid CYP76 medium pass CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Bra001775.1-P Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
Bra002747.1-P Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
Bra003795.1-P Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra004517.1-P Terpenoid CYP76 medium pass CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
Bra004591.1-P Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra004921.1-P Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Bra005400.1-P Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra005420.1-P Terpenoid CYP76 low borderline CYP76__00024__sp_W0FKI0_DOX1_PERHD
Bra005811.1-P Terpenoid CYP76 medium pass CYP76__00006__sp_A0A1D8QMD1_C76K6_SALFT
Bra006830.1-P Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra007571.1-P Terpenoid CYP76 medium borderline CYP76__00016__sp_P0DXJ6_C7631_LOPWI
Bra007636.1-P Terpenoid CYP76 medium pass CYP76__00023__sp_S4UX02_CYPH1_SALMI
Bra008134.1-P Terpenoid CYP76 low borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
Bra008510.1-P Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Bra008519.1-P Terpenoid CYP76 low borderline CYP76__00016__sp_P0DXJ6_C7631_LOPWI
Bra008760.1-P Terpenoid CYP76 medium pass CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
Bra009019.1-P Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Bra009020.1-P Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Bra009070.1-P Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
Bra009100.1-P Terpenoid CYP76 low borderline CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Bra009126.1-P Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra009312.1-P Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Bra009437.1-P Terpenoid CYP76 low borderline CYP76__00003__sp_A0A0S1TPC7_C76K6_SALPM
Bra009786.1-P Terpenoid CYP76 medium borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
Bra009819.1-P Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Bra009868.1-P Terpenoid CYP76 low borderline CYP76__00017__sp_Q14T82_C76B9_PETHY
Bra010214.1-P Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
Bra010596.1-P Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
Bra010597.1-P Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra010598.1-P Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra010644.1-P Terpenoid CYP76 medium pass CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Bra011671.1-P Terpenoid CYP76 medium borderline CYP76__00023__sp_S4UX02_CYPH1_SALMI
Bra011755.1-P Terpenoid CYP76 medium pass CYP76__00013__sp_D1MI46_C76BA_SWEMU
Bra011756.1-P Terpenoid CYP76 medium pass CYP76__00013__sp_D1MI46_C76BA_SWEMU
Bra011757.1-P Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra011758.1-P Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Bra011759.1-P Terpenoid CYP76 medium pass CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Bra011761.1-P Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
Bra011762.1-P Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Bra011821.1-P Terpenoid CYP76 medium pass CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU