PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
Bra005522.1-P Terpenoid AACT medium borderline
Bra013202.1-P Terpenoid AACT low borderline
Bra017469.1-P Terpenoid AACT medium borderline
Bra020673.1-P Terpenoid AACT medium borderline
Bra020710.1-P Terpenoid AACT medium borderline
Bra021829.1-P Terpenoid AACT medium borderline
Bra022152.1-P Terpenoid AACT medium pass
Bra022927.1-P Terpenoid AACT medium borderline
Bra030586.1-P Terpenoid AACT medium borderline
Bra036182.1-P Terpenoid AACT medium borderline
Bra037501.1-P Terpenoid AACT medium borderline
Bra000109.1-P Terpenoid BAHD medium pass
Bra000110.1-P Terpenoid BAHD medium pass
Bra000179.1-P Terpenoid BAHD medium pass
Bra000394.1-P Terpenoid BAHD medium pass
Bra000576.1-P Terpenoid BAHD medium pass
Bra000606.1-P Terpenoid BAHD medium pass
Bra000903.1-P Terpenoid BAHD medium pass
Bra000932.1-P Terpenoid BAHD medium pass
Bra001150.1-P Terpenoid BAHD low borderline
Bra001220.1-P Terpenoid BAHD medium pass
Bra001316.1-P Terpenoid BAHD medium pass
Bra001359.1-P Terpenoid BAHD low borderline
Bra001440.1-P Terpenoid BAHD medium pass
Bra001441.1-P Terpenoid BAHD medium pass
Bra001624.1-P Terpenoid BAHD low borderline
Bra001714.1-P Terpenoid BAHD medium pass
Bra002006.1-P Terpenoid BAHD low borderline
Bra002026.1-P Terpenoid BAHD medium pass
Bra002040.1-P Terpenoid BAHD medium pass
Bra002041.1-P Terpenoid BAHD medium pass
Bra002161.1-P Terpenoid BAHD low borderline
Bra002231.1-P Terpenoid BAHD low borderline
Bra002296.1-P Terpenoid BAHD medium pass
Bra002444.1-P Terpenoid BAHD medium pass
Bra002465.1-P Terpenoid BAHD medium pass
Bra002909.1-P Terpenoid BAHD medium pass
Bra002910.1-P Terpenoid BAHD medium pass
Bra002911.1-P Terpenoid BAHD medium pass
Bra002915.1-P Terpenoid BAHD medium pass
Bra002962.1-P Terpenoid BAHD medium pass
Bra003060.1-P Terpenoid BAHD medium pass
Bra003254.1-P Terpenoid BAHD medium pass
Bra003292.1-P Terpenoid BAHD medium pass
Bra003595.1-P Terpenoid BAHD medium pass
Bra003629.1-P Terpenoid BAHD medium pass
Bra003775.1-P Terpenoid BAHD medium pass
Bra003849.1-P Terpenoid BAHD medium pass
Bra003953.1-P Terpenoid BAHD medium pass
Bra003961.1-P Terpenoid BAHD medium pass