PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
Bra002177.1-P Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Bra002645.1-P Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Bra004316.1-P Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bra004762.1-P Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Bra007764.1-P Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Bra008438.1-P Phenylpropanoid CCR medium borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
Bra008743.1-P Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Bra008822.1-P Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bra013768.1-P Phenylpropanoid CCR medium pass CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bra013769.1-P Phenylpropanoid CCR medium pass CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bra015621.1-P Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Bra015740.1-P Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Bra021863.1-P Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Bra023481.1-P Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Bra024073.1-P Phenylpropanoid CCR medium borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
Bra024744.1-P Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bra024746.1-P Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bra024747.1-P Phenylpropanoid CCR medium pass CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bra026090.1-P Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Bra026600.1-P Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Bra026737.1-P Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Bra027457.1-P Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Bra030206.1-P Phenylpropanoid CCR low borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Bra032137.1-P Phenylpropanoid CCR medium pass CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Bra035150.1-P Phenylpropanoid CCR medium borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
Bra040313.1-P Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR