PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
Reset
Gene Pathway Family Confidence Status
Bra000329.1-P Alkaloid 7DLGT low borderline
Bra000330.1-P Alkaloid 7DLGT low borderline
Bra000471.1-P Alkaloid 7DLGT low borderline
Bra000542.1-P Alkaloid 7DLGT medium pass
Bra000942.1-P Alkaloid 7DLGT high pass
Bra001505.1-P Alkaloid 7DLGT low borderline
Bra001845.1-P Alkaloid 7DLGT low borderline
Bra001846.1-P Alkaloid 7DLGT low borderline
Bra001847.1-P Alkaloid 7DLGT low borderline
Bra002002.1-P Alkaloid 7DLGT low borderline
Bra002556.1-P Alkaloid 7DLGT high pass
Bra003220.1-P Alkaloid 7DLGT high pass
Bra003824.1-P Alkaloid 7DLGT low borderline
Bra004787.1-P Alkaloid 7DLGT low borderline
Bra004788.1-P Alkaloid 7DLGT medium pass
Bra005227.1-P Alkaloid 7DLGT low borderline
Bra005229.1-P Alkaloid 7DLGT low borderline
Bra005241.1-P Alkaloid 7DLGT medium pass
Bra005242.1-P Alkaloid 7DLGT low borderline
Bra005243.1-P Alkaloid 7DLGT low borderline
Bra005245.1-P Alkaloid 7DLGT medium pass
Bra005246.1-P Alkaloid 7DLGT medium pass
Bra005641.1-P Alkaloid 7DLGT medium pass
Bra005869.1-P Alkaloid 7DLGT high pass
Bra006271.1-P Alkaloid 7DLGT low borderline
Bra006707.1-P Alkaloid 7DLGT high pass
Bra006971.1-P Alkaloid 7DLGT low borderline
Bra006972.1-P Alkaloid 7DLGT low borderline
Bra006973.1-P Alkaloid 7DLGT low borderline
Bra007184.1-P Alkaloid 7DLGT medium pass
Bra007812.1-P Alkaloid 7DLGT medium pass
Bra008354.1-P Alkaloid 7DLGT medium pass
Bra008535.1-P Alkaloid 7DLGT medium pass
Bra008540.1-P Alkaloid 7DLGT high pass
Bra008734.1-P Alkaloid 7DLGT low borderline
Bra008873.1-P Alkaloid 7DLGT medium pass
Bra009142.1-P Alkaloid 7DLGT high pass
Bra009143.1-P Alkaloid 7DLGT medium pass
Bra009144.1-P Alkaloid 7DLGT high pass
Bra009145.1-P Alkaloid 7DLGT high pass
Bra009146.1-P Alkaloid 7DLGT high pass
Bra009147.1-P Alkaloid 7DLGT high pass
Bra010190.1-P Alkaloid 7DLGT low borderline
Bra011490.1-P Alkaloid 7DLGT low borderline
Bra011492.1-P Alkaloid 7DLGT low borderline
Bra011493.1-P Alkaloid 7DLGT low borderline
Bra011495.1-P Alkaloid 7DLGT low borderline
Bra011496.1-P Alkaloid 7DLGT low borderline
Bra011705.1-P Alkaloid 7DLGT low borderline
Bra012092.1-P Alkaloid 7DLGT medium pass